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About Soaplab
Soaplab services are command line applications, wrapped as SOAP services, and served from a Soaplab server. All Soaplab services have the same generic set of SOAP operations (depending on the Soaplab version) as they all share a standardised interface.
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More information on Soaplab clients is available here.
Further documentation on Soaplab services is available:
- Soaplab overview
- Soaplab client guide page
- EBI Soaplab server documentation
- Soaplab 2
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Provider:
European Bioinformatics Institute (EMBL-EBI)
Location:
United Kingdom
Submitter/Source:
SoapLab Support (almost 12 years ago)
Base URL:
http://www.ebi.ac.uk:80/soaplab/typed/services/display.pepwheel
WSDL Location:
http://www.ebi.ac.uk/soaplab/typed/services/display.pepwheel?wsdl(download last cached WSDL file)
Documentation URL(s): SoapLab Support (over 10 years ago) http://emboss.sourceforge.net/apps/release/6.0/emboss/apps/pepwheel.html Login to add a documentation URL Description(s): from provider’s description doc (over 10 years ago) Draw a helical wheel diagram for a protein sequence
SoapLab Support(over 10 years ago)
Draw a helical wheel diagram for a protein sequence
Login to add a description ELIXIR Description(s): No info yet Login to add an elixir description Details (from Soaplab server): from Soaplab server(over 10 years ago)
- ds_lsr_analysis :
- analysis :
- name : pepwheel
- installation : Soaplab2 default installation
- type : Display, Protein 2D Structure
- output :
- description : Draw a helical wheel diagram for a protein sequence
- version : 6.1.0
- analysis_extension :
- input :
- analysis :
- ds_lsr_analysis :
- analysis :
- name : pepwheel
- installation : Soaplab2 default installation
- type : Display, Protein 2D Structure
- output :
- description : Draw a helical wheel diagram for a protein sequence
- version : 6.1.0
- analysis_extension :
- option :
- name : emboss
- type : normal
- value : true
- name : installation
- type : normal
- value : Soaplab2 default installation
- name : version
- type : normal
- value : 6.1.0
- event :
- action :
- id : _E_1
- app_info :
- category : display
- help_url : http://emboss.sourceforge.net/apps/release/6.1/emboss/apps/pepwheel.html
- parameter :
- data :
- list :
- list_item :
- level : 0
- value : gcg
- level : 0
- value : gcg8
- level : 0
- value : embl
- level : 0
- value : swiss
- level : 0
- value : fasta
- level : 0
- value : ncbi
- level : 0
- value : genbank
- level : 0
- value : nbrf
- level : 0
- value : pir
- level : 0
- value : codata
- level : 0
- value : strider
- level : 0
- value : clustal
- level : 0
- value : phylip
- level : 0
- value : acedb
- level : 0
- value : msf
- level : 0
- value : jackknifer
- level : 0
- value : jackknifernon
- level : 0
- value : nexus
- level : 0
- value : nexusnon
- level : 0
- value : treecon
- level : 0
- value : mega
- level : 0
- value : meganon
- level : 0
- value : ig
- level : 0
- value : staden
- level : 0
- value : text
- level : 0
- value : raw
- type : full
- list_item :
- list :
- base :
- standard :
- list :
- list_item :
- level : 0
- shown_as : Portable Network Graphics (png)
- value : png
- level : 0
- shown_as : Postscript
- value : colourps
- type : full
- list_item :
- repeatable :
- list :
- base :
- base :
- name : wheel
- default : false
- mandatory : false
- qualifier : wheel
- prompt : Plot the wheel
- type : boolean
- ordering : 4
- range :
- format : %d
- max : 100
- min : 2
- repeatable :
- base :
- name : steps
- help : The number of residues plotted per turn is this value divided by the ‘turns’ value.
- default : 18
- option :
- name : scalemax
- type : style
- value : 100
- name : scalemin
- type : style
- value : 2
- mandatory : false
- qualifier : steps
- prompt : Number of steps
- type : long
- ordering : 5
- range :
- format : %d
- max : 100
- min : 1
- repeatable :
- base :
- name : turns
- help : The number of residues plotted per turn is the ‘steps’ value divided by this value.
- default : 5
- option :
- name : scalemax
- type : style
- value : 100
- name : scalemin
- type : style
- value : 1
- mandatory : false
- qualifier : turns
- prompt : Number of turns
- type : long
- ordering : 6
- base :
- name : amphipathic
- help : If this is true then the residues ACFGILMVWY are marked as squares and all other residues are unmarked. This overrides any other markup that you may have specified using the qualifiers ‘-squares’, ‘-diamonds’ and ‘-octags’.
- default : false
- mandatory : false
- qualifier : amphipathic
- prompt : Prompt for amphipathic residue marking
- type : boolean
- ordering : 9
- standard :
- repeatable :
- base :
- standard :
- repeatable :
- base :
- standard :
- repeatable :
- base :
- data :
- result :
- iotype : output
- base :
- data :
- result :
- iotype : output
- base :
- name : Graphics_in_PNG
- option :
- name : allow_non_existent
- type : normal
- value : true
- name : calculated_gxtitle
- type : normal
- value : ${sequence.name}
- name : datatype
- type : normal
- value : bindata
- name : mimetype
- type : normal
- value : image/png
- name : nodisplay
- type : style
- value : true
- mandatory : false
- qualifier : Graphics_in_PNG
- type : byte[][]
- method : %%%Graphics_in_PNG%%% ${Graphics_in_PNG}
- ordering : 7
- data :
- option :
- input :
- name : wheel
- default : false
- mandatory : false
- type : boolean
- name : steps
- default : 18
- mandatory : false
- type : long
- name : turns
- default : 5
- mandatory : false
- type : long
- name : amphipathic
- default : false
- mandatory : false
- type : boolean
- analysis :
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