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About Soaplab
Soaplab services are command line applications, wrapped as SOAP services, and served from a Soaplab server. All Soaplab services have the same generic set of SOAP operations (depending on the Soaplab version) as they all share a standardised interface.
Certain tools, like the Taverna workflow workbench, provide automatic support for the Soaplab way of executing these services. In some cases you will need to use the Soaplab Server Base URL rather than the WSDL location in these tools.
More information on Soaplab clients is available here.
Further documentation on Soaplab services is available:
- Soaplab overview
- Soaplab client guide page
- EBI Soaplab server documentation
- Soaplab 2
- Sourceforge site for EMBOSS Soaplab services
Provider:
European Bioinformatics Institute (EMBL-EBI)
Location:
United Kingdom
Submitter/Source:
SoapLab Support (almost 12 years ago)
Base URL:
http://www.ebi.ac.uk:80/soaplab/typed/services/display.cirdna
WSDL Location:
http://www.ebi.ac.uk/soaplab/typed/services/display.cirdna?wsdl(download last cached WSDL file)
Documentation URL(s): SoapLab Support (over 10 years ago) http://emboss.sourceforge.net/apps/release/6.0/emboss/apps/cirdna.html Login to add a documentation URL Description(s): from provider’s description doc (over 10 years ago) Draws circular maps of DNA constructs
SoapLab Support(over 10 years ago)
Draws circular maps of DNA constructs
Login to add a description ELIXIR Description(s): No info yet Login to add an elixir description Details (from Soaplab server): from Soaplab server(over 10 years ago)
- ds_lsr_analysis :
- analysis :
- name : cirdna
- installation : Soaplab2 default installation
- type : Display
- output :
- description : Draws circular maps of DNA constructs
- version : 6.1.0
- analysis_extension :
- input :
- analysis :
- ds_lsr_analysis :
- analysis :
- name : cirdna
- installation : Soaplab2 default installation
- type : Display
- output :
- description : Draws circular maps of DNA constructs
- version : 6.1.0
- analysis_extension :
- option :
- name : emboss
- type : normal
- value : true
- name : installation
- type : normal
- value : Soaplab2 default installation
- name : version
- type : normal
- value : 6.1.0
- event :
- action :
- id : _E_1
- app_info :
- category : display
- help_url : http://emboss.sourceforge.net/apps/release/6.1/emboss/apps/cirdna.html
- parameter :
- data :
- ioformat : unspecified
- iotype : input
- repeatable :
- base :
- base :
- name : ruler
- default : false
- mandatory : false
- qualifier : ruler
- prompt : Draw a ruler
- type : boolean
- ordering : 8
- choice_list :
- separator : ,
- grouptype : zero_or_more
- base :
- name : blocktype_Open
- default : false
- mandatory : false
- qualifier : Open
- type : boolean
- prompt : Open blocks
- ordering : 10
- name : blocktype_Filled
- default : true
- mandatory : false
- qualifier : Filled
- type : boolean
- prompt : Filled blocks
- ordering : 11
- name : blocktype_Outline
- default : false
- mandatory : false
- qualifier : Outline
- type : boolean
- prompt : Black border
- ordering : 12
- base :
- choice_list :
- separator : ,
- grouptype : zero_or_more
- base :
- name : posticks_In
- default : false
- mandatory : false
- qualifier : In
- type : boolean
- ordering : 15
- name : posticks_Out
- default : true
- mandatory : false
- qualifier : Out
- type : boolean
- ordering : 16
- base :
- choice_list :
- separator : ,
- grouptype : zero_or_more
- base :
- name : posblocks_In
- default : true
- mandatory : false
- qualifier : In
- type : boolean
- ordering : 18
- name : posblocks_Out
- default : false
- mandatory : false
- qualifier : Out
- type : boolean
- ordering : 19
- base :
- standard :
- list :
- list_item :
- level : 0
- shown_as : Portable Network Graphics (png)
- value : png
- level : 0
- shown_as : Postscript
- value : colourps
- type : full
- list_item :
- repeatable :
- list :
- base :
- range :
- format : %d
- min : 1
- repeatable :
- base :
- name : maxgroups
- default : 20
- option :
- name : scalemin
- type : style
- value : 1
- mandatory : false
- qualifier : maxgroups
- prompt : Maximum number of groups
- type : long
- ordering : 4
- range :
- format : %d
- min : 1
- repeatable :
- base :
- name : maxlabels
- default : 10000
- option :
- name : scalemin
- type : style
- value : 1
- mandatory : false
- qualifier : maxlabels
- prompt : Maximum number of labels
- type : long
- ordering : 5
- range :
- format : %f
- max : 360
- min : 0
- repeatable :
- base :
- name : originangle
- default : 90
- option :
- name : scalemax
- type : style
- value : 360
- mandatory : false
- qualifier : originangle
- prompt : Position in degrees of the molecule’s origin on the circle
- type : float
- ordering : 13
- base :
- name : intersymbol
- default : false
- mandatory : false
- qualifier : intersymbol
- prompt : Horizontal junctions between blocks
- type : boolean
- ordering : 20
- range :
- format : %d
- max : 15
- min : 0
- repeatable :
- base :
- name : intercolour
- default : 1
- option :
- name : scalemax
- type : style
- value : 15
- mandatory : false
- qualifier : intercolour
- prompt : Colour of junctions between blocks (enter a colour number)
- type : long
- ordering : 21
- base :
- name : interticks
- default : false
- mandatory : false
- qualifier : interticks
- prompt : Horizontal junctions between ticks
- type : boolean
- ordering : 22
- range :
- format : %d
- min : 0
- repeatable :
- base :
- name : gapsize
- default : 500
- mandatory : false
- qualifier : gapsize
- prompt : Interval between ticks in the ruler
- type : long
- ordering : 23
- base :
- name : ticklines
- default : false
- mandatory : false
- qualifier : ticklines
- prompt : Vertical lines at the ruler’s ticks
- type : boolean
- ordering : 24
- range :
- format : %f
- min : 0.0
- repeatable :
- base :
- name : textheight
- help : Height of text. Enter a number <1.0 or >1.0 to decrease or increase the size, respectively
- default : 1.0
- option :
- name : scalemin
- type : style
- value : 0.0
- mandatory : false
- qualifier : textheight
- prompt : Text scale factor
- type : float
- ordering : 25
- range :
- format : %f
- min : 0.0
- repeatable :
- base :
- name : textlength
- help : Length of text. Enter a number <1.0 or >1.0 to decrease or increase the size, respectively
- default : 1.0
- option :
- name : scalemin
- type : style
- value : 0.0
- mandatory : false
- qualifier : textlength
- prompt : Length of text multiplier
- type : float
- ordering : 26
- range :
- format : %f
- min : 0.0
- repeatable :
- base :
- name : tickheight
- help : Height of ticks. Enter a number <1.0 or >1.0 to decrease or increase the size, respectively
- default : 1.0
- option :
- name : scalemin
- type : style
- value : 0.0
- mandatory : false
- qualifier : tickheight
- prompt : Height of ticks multiplier
- type : float
- ordering : 27
- range :
- format : %f
- min : 0.0
- repeatable :
- base :
- name : blockheight
- help : Height of blocks. Enter a number <1.0 or >1.0 to decrease or increase the size, respectively
- default : 1.0
- option :
- name : scalemin
- type : style
- value : 0.0
- mandatory : false
- qualifier : blockheight
- prompt : Height of blocks multiplier
- type : float
- ordering : 28
- range :
- format : %f
- min : 0.0
- repeatable :
- base :
- name : rangeheight
- help : Height of range ends. Enter a number <1.0 or >1.0 to decrease or increase the size, respectively
- default : 1.0
- option :
- name : scalemin
- type : style
- value : 0.0
- mandatory : false
- qualifier : rangeheight
- prompt : Height of range ends multiplier
- type : float
- ordering : 29
- range :
- format : %f
- min : 0.0
- repeatable :
- base :
- name : gapgroup
- help : Space between groups. Enter a number <1.0 or >1.0 to decrease or increase the size, respectively
- default : 1.0
- option :
- name : scalemin
- type : style
- value : 0.0
- mandatory : false
- qualifier : gapgroup
- prompt : Space between groups multiplier
- type : float
- ordering : 30
- range :
- format : %f
- min : 0.0
- repeatable :
- base :
- name : postext
- help : Space between text and ticks, blocks, and ranges. Enter a number <1.0 or >1.0 to decrease or increase the size, respectively
- default : 1.0
- option :
- name : scalemin
- type : style
- value : 0.0
- mandatory : false
- qualifier : postext
- prompt : Space between text and ticks, blocks, and ranges multiplier
- type : float
- ordering : 31
- data :
- result :
- iotype : output
- base :
- data :
- result :
- iotype : output
- base :
- name : Graphics_in_PNG
- option :
- name : allow_non_existent
- type : normal
- value : true
- name : datatype
- type : normal
- value : bindata
- name : mimetype
- type : normal
- value : image/png
- name : nodisplay
- type : style
- value : true
- mandatory : false
- qualifier : Graphics_in_PNG
- type : byte[][]
- method : %%%Graphics_in_PNG%%% ${Graphics_in_PNG}
- ordering : 32
- data :
- option :
- input :
- name : ruler
- default : false
- mandatory : false
- type : boolean
- name : blocktype_Open
- default : false
- mandatory : false
- type : boolean
- name : blocktype_Filled
- default : true
- mandatory : false
- type : boolean
- name : blocktype_Outline
- default : false
- mandatory : false
- type : boolean
- name : posticks_In
- default : false
- mandatory : false
- type : boolean
- name : posticks_Out
- default : true
- mandatory : false
- type : boolean
- name : posblocks_In
- default : true
- mandatory : false
- type : boolean
- name : posblocks_Out
- default : false
- mandatory : false
- type : boolean
- name : maxgroups
- default : 20
- mandatory : false
- type : long
- name : maxlabels
- default : 10000
- mandatory : false
- type : long
- name : originangle
- default : 90
- mandatory : false
- type : float
- name : intersymbol
- default : false
- mandatory : false
- type : boolean
- name : intercolour
- default : 1
- mandatory : false
- type : long
- name : interticks
- default : false
- mandatory : false
- type : boolean
- name : gapsize
- default : 500
- mandatory : false
- type : long
- name : ticklines
- default : false
- mandatory : false
- type : boolean
- name : textheight
- default : 1.0
- mandatory : false
- type : float
- name : textlength
- default : 1.0
- mandatory : false
- type : float
- name : tickheight
- default : 1.0
- mandatory : false
- type : float
- name : blockheight
- default : 1.0
- mandatory : false
- type : float
- name : rangeheight
- default : 1.0
- mandatory : false
- type : float
- name : gapgroup
- default : 1.0
- mandatory : false
- type : float
- name : postext
- default : 1.0
- mandatory : false
- type : float
- analysis :
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