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Soaplab services are command line applications, wrapped as SOAP services, and served from a Soaplab server. All Soaplab services have the same generic set of SOAP operations (depending on the Soaplab version) as they all share a standardised interface.
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- Soaplab overview
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Provider:
European Bioinformatics Institute (EMBL-EBI)
Location:
United Kingdom
Submitter/Source:
SoapLab Support (almost 12 years ago)
Base URL:
http://www.ebi.ac.uk:80/soaplab/typed/services/alignment_dot_plots.polydot
WSDL Location:
http://www.ebi.ac.uk/soaplab/typed/services/alignment_dot_plots.polydot?wsdl(download last cached WSDL file)
Documentation URL(s): SoapLab Support (over 10 years ago) http://emboss.sourceforge.net/apps/release/6.0/emboss/apps/polydot.html Login to add a documentation URL Description(s): from provider’s description doc (over 10 years ago) Draw dotplots for all-against-all comparison of a sequence set
SoapLab Support(over 10 years ago)
Draw dotplots for all-against-all comparison of a sequence set
Login to add a description ELIXIR Description(s): No info yet Login to add an elixir description Details (from Soaplab server): from Soaplab server(over 10 years ago)
- ds_lsr_analysis :
- analysis :
- name : polydot
- installation : Soaplab2 default installation
- type : Alignment Dot plots
- output :
- description : Draw dotplots for all-against-all comparison of a sequence set
- version : 6.1.0
- analysis_extension :
- input :
- analysis :
- ds_lsr_analysis :
- analysis :
- name : polydot
- installation : Soaplab2 default installation
- type : Alignment Dot plots
- output :
- description : Draw dotplots for all-against-all comparison of a sequence set
- version : 6.1.0
- analysis_extension :
- option :
- name : emboss
- type : normal
- value : true
- name : installation
- type : normal
- value : Soaplab2 default installation
- name : version
- type : normal
- value : 6.1.0
- event :
- action :
- id : _E_1
- app_info :
- category : alignment_dot_plots
- help_url : http://emboss.sourceforge.net/apps/release/6.1/emboss/apps/polydot.html
- parameter :
- data :
- list :
- list_item :
- level : 0
- value : gcg
- level : 0
- value : gcg8
- level : 0
- value : embl
- level : 0
- value : swiss
- level : 0
- value : fasta
- level : 0
- value : ncbi
- level : 0
- value : genbank
- level : 0
- value : nbrf
- level : 0
- value : pir
- level : 0
- value : codata
- level : 0
- value : strider
- level : 0
- value : clustal
- level : 0
- value : phylip
- level : 0
- value : acedb
- level : 0
- value : msf
- level : 0
- value : jackknifer
- level : 0
- value : jackknifernon
- level : 0
- value : nexus
- level : 0
- value : nexusnon
- level : 0
- value : treecon
- level : 0
- value : mega
- level : 0
- value : meganon
- level : 0
- value : ig
- level : 0
- value : staden
- level : 0
- value : text
- level : 0
- value : raw
- type : full
- list_item :
- list :
- base :
- range :
- format : %d
- min : 2
- repeatable :
- base :
- name : wordsize
- default : 6
- option :
- name : scalemin
- type : style
- value : 2
- mandatory : false
- qualifier : wordsize
- prompt : Word size
- type : long
- ordering : 4
- data :
- result :
- iotype : output
- base :
- standard :
- list :
- list_item :
- level : 0
- shown_as : Portable Network Graphics (png)
- value : png
- level : 0
- shown_as : Postscript
- value : colourps
- type : full
- list_item :
- repeatable :
- list :
- base :
- range :
- format : %d
- min : 0
- repeatable :
- base :
- name : gap
- help : This specifies the size of the gap that is used to separate the individual dotplots in the display. The size is measured in residues, as displayed in the output.
- default : 10
- mandatory : false
- qualifier : gap
- prompt : Gap (in residues) between dotplots
- type : long
- ordering : 6
- base :
- name : boxit
- default : false
- mandatory : false
- qualifier : boxit
- prompt : Draw a box around each dotplot
- type : boolean
- ordering : 7
- base :
- name : dumpfeat
- default : false
- mandatory : false
- qualifier : dumpfeat
- prompt : Dump all matches as feature files
- type : boolean
- ordering : 8
- standard :
- list :
- list_item :
- level : 0
- value : embl
- level : 0
- value : genbank
- level : 0
- value : ddbj
- level : 0
- value : gff
- level : 0
- value : acedb
- level : 0
- value : swissprot
- type : full
- list_item :
- repeatable :
- list :
- base :
- data :
- result :
- iotype : output
- base :
- data :
- result :
- iotype : output
- base :
- name : Graphics_in_PNG
- option :
- name : allow_non_existent
- type : normal
- value : true
- name : datatype
- type : normal
- value : bindata
- name : mimetype
- type : normal
- value : image/png
- name : nodisplay
- type : style
- value : true
- mandatory : false
- qualifier : Graphics_in_PNG
- type : byte[][]
- method : %%%Graphics_in_PNG%%% ${Graphics_in_PNG}
- ordering : 10
- data :
- option :
- input :
- name : wordsize
- default : 6
- mandatory : false
- type : long
- name : gap
- default : 10
- mandatory : false
- type : long
- name : boxit
- default : false
- mandatory : false
- type : boolean
- name : dumpfeat
- default : false
- mandatory : false
- type : boolean
- analysis :
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