Provider:
The Protein Domain Database (ProDom)
Location:
France
Submitter / Source:
prohelp (over 2 years ago)
Base URL:
http://prodom.prabi.fr/prodom/2006.1/cgi-bin/fetchProDom.cgi
WSDL Location:
http://prodom.prabi.fr/prodom/current/wsdl/fetchProDom.wsdl(download last cached WSDL file)
Documentation URL(s): ProDom team (about 1 year ago)http://prodom.prabi.fr/prodom/current/documentation/fetchProDom.html
Login to add a documentation URL Description(s): Franck Tanoh (over 2 years ago)Retrieve information from the ProDom database .
The EMBRACE Registry (about 1 year ago)fetchProDom is a set of five different webservices that interrogates the ProDom database.
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- fetchdom: Enter one or several (separated by spaces) ProDom AC (eg PD000039) and it returns the family(ies) description in prodom format.
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- fetchdom_fasta: same as above with the results given in fasta format.
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- fetchdom_align: from one ProDom AC gives two output: one is the alignment of the proteins of the ProDom family and the other is the consensus sequence. This particular webservice is made to work with blastProDom.
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- fetchdom_keyword: Enter one or several keyword(s)(separated by a blank space) and a “boolean”: and/or and it returns the ProDom familiy(ies) which have the keyword(s) in the description field in prodom format and a file with only their AC.
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- fetchProt: Enter one Protein AC (SWISS-Prot or TREmbl) and it returns the domain composition of this protein.
Please see ProDom help page and data file format help page if needed.
We have a perl script available to run this webservice from your computer. Please install SOAP Lite before.
Login to add a description License(s): None Login to add license info Cost: No info yet Login to add cost info Usage Conditions: No info yet Login to add usage conditions info Contact Info: None Login to add contact info Publications: for this service. This can be a URI to the publication and/or a DOI. None Login to add publication info Citations: None Login to add a citation