Provider:
European Bioinformatics Institute (EMBL-EBI)
Location:
United Kingdom
Submitter/Source:
Michael CornellCurator (over 1 year ago)
Base URL:
http://www.ebi.ac.uk/Tools/services/soap/emboss_isochore
WSDL Location:
http://www.ebi.ac.uk/Tools/services/soap/emboss_isochore?wsdl(download last cached WSDL file)
Documentation URL(s): Michael Cornell Curator(over 1 year ago) http://www.ebi.ac.uk/Tools/webservices/services/seqstats/emboss_isochore_soap Login to add a documentation URL Description(s): Michael Cornell Curator(over 1 year ago)
isochore plots GC content in windows over a DNA sequence. The data may also be written to output file. The window wize and shift increment (the number of bases separating the start of each window) may be specified. isochore is suitable for use with large sequences such as complete chromosomes or large genomic contigs, although interesting results can also be obtained from shorter sequences.
Login to add a description ELIXIR Description(s): Michael Cornell Curator(7 months ago)
isochore plots GC content in windows over a DNA sequence. The data may also be written to output file. The window wize and shift increment (the number of bases separating the start of each window) may be specified. isochore is suitable for use with large sequences such as complete chromosomes or large genomic contigs, although interesting results can also be obtained from shorter sequences.
Login to add an elixir description License(s): EMBL-EBI Support(over 1 year ago)
This service does not require a license but should be used according to EMBL-EBI’s policies http://www.ebi.ac.uk/about/terms-of-use
Login to add license info Cost: EMBL-EBI Support(over 1 year ago)
Free.
Login to add cost info Usage conditions: EMBL-EBI Support(over 1 year ago)
E-mail supplied for submission must be a valid e-mail address and no more than 30 concurrent jobs should be submitted at any one time, see http://www.ebi.ac.uk/Tools/webservices/ and the EMBL-EBI Terms of Use: http://www.ebi.ac.uk/about/terms-of-use
Login to add usage conditions info Contact info: EMBL-EBI Support (over 1 year ago) Michael Cornell Curator(7 months ago)
Login to add contact info How to cite this service: No info yet Login to add how to cite info Publications about this service: for this service (this can be in a common citation format like Bibtex, MLA or APA, a DOI, a URL, etc.) EMBL-EBI Support(over 1 year ago)
McWilliam H., Li W., Uludag M., Squizzato S., Park Y.M., Buso N., Cowley A.P. and Lopez R. (2013) “Analysis Tool Web Services from the EMBL-EBI” Nucleic Acids Res. 41(Web Server issue):W597-600 PMID: 23671338 (http://europepmc.org/abstract/MED/23671338) DOI: 10.1093/nar/gkt376
EMBL-EBI Support(over 1 year ago)
Goujon M., McWilliam H., Li W., Valentin F., Squizzato S., Paern J. and Lopez R (2010) “A new bioinformatics analysis tools framework at EMBL-EBI” Nucleic Acids Res. 38(Web Server issue):W695-9 PMID: 20439314 (http://europepmc.org/abstract/MED/20439314) DOI: 10.1093/nar/gkq313
EMBL-EBI Support(over 1 year ago)
Rice P., Longden I. and Bleasby A. (2000) “EMBOSS: the European Molecular Biology Open Software Suite” Trends in Genetics 16(6):276-277 PMID: 10827456 (http://europepmc.org/abstract/MED/10827456) DOI: 10.1016/S0168-9525(00)02024-2
Login to add publications info Citations of this service: No info yet Login to add citations info Example workflows using this service: See all workflows on myExperiment that use this service Login to add workflows info