Provider:
European Bioinformatics Institute (EMBL-EBI)
Location:
United Kingdom
Submitter/Source:
Michael CornellCurator (over 6 years ago)
Base URL:
http://www.ebi.ac.uk/Tools/services/soap/mapmi
WSDL Location:
http://www.ebi.ac.uk/Tools/services/soap/mapmi?wsdl(download last cached WSDL file)
Documentation URL(s): Michael Cornell Curator(over 6 years ago) http://www.ebi.ac.uk/Tools/webservices/services/rna/mapmi_soap Login to add a documentation URL Description(s): Michael Cornell Curator(over 6 years ago)
MapMi is a tool for mapping and analysis of miRNA sequences. It is designed to locate miRNA precursor sequences in existing genomic sequences (e.g Ensembl and Ensembl Metazoa), using potential mature miRNA sequences as input. After searching the genome for the provided mature sequences, these hits are extended and classified taking into account major structural properties of known miRNA precursors.
Login to add a description ELIXIR Description(s): Michael Cornell Curator(over 5 years ago)
MapMi is a tool for mapping and analysis of miRNA sequences. It is designed to locate miRNA precursor sequences in existing genomic sequences (e.g Ensembl and Ensembl Metazoa), using potential mature miRNA sequences as input. After searching the genome for the provided mature sequences, these hits are extended and classified taking into account major structural properties of known miRNA precursors.
Login to add an elixir description License(s): EMBL-EBI Support(over 6 years ago)
This service does not require a license but should be used according to EMBL-EBI’s policies http://www.ebi.ac.uk/about/terms-of-use
Login to add license info Cost: EMBL-EBI Support(over 6 years ago)
Free.
Login to add cost info Usage conditions: EMBL-EBI Support(over 6 years ago)
E-mail supplied for submission must be a valid e-mail address and no more than 30 concurrent jobs should be submitted at any one time, see http://www.ebi.ac.uk/Tools/webservices/ and the EMBL-EBI Terms of Use: http://www.ebi.ac.uk/about/terms-of-use
Login to add usage conditions info Contact info: EMBL-EBI Support(over 6 years ago)
EMBL-EBI support: http://www.ebi.ac.uk/support/WebServices
Login to add contact info How to cite this service: No info yet Login to add how to cite info Publications about this service: for this service (this can be in a common citation format like Bibtex, MLA or APA, a DOI, a URL, etc.) EMBL-EBI Support(over 6 years ago)
Guerra-Assunção J.A. and Enright A.J. (2010) “MapMi: automated mapping of microRNA loci” BMC Bioinformatics 11:133 PMID: 20233390 (http://europepmc.org/abstract/MED/20233390) DOI: 10.1186/1471-2105-11-133
EMBL-EBI Support(over 6 years ago)
McWilliam H., Li W., Uludag M., Squizzato S., Park Y.M., Buso N., Cowley A.P. and Lopez R. (2013) “Analysis Tool Web Services from the EMBL-EBI” Nucleic Acids Res. 41(Web Server issue):W597-600 PMID: 23671338 (http://europepmc.org/abstract/MED/23671338) DOI: 10.1093/nar/gkt376
EMBL-EBI Support(over 6 years ago)
Goujon M., McWilliam H., Li W., Valentin F., Squizzato S., Paern J. and Lopez R (2010) “A new bioinformatics analysis tools framework at EMBL-EBI” Nucleic Acids Res. 38(Web Server issue):W695-9 PMID: 20439314 (http://europepmc.org/abstract/MED/20439314) DOI: 10.1093/nar/gkq313
Login to add publications info Citations of this service: No info yet Login to add citations info Example workflows using this service: See all workflows on myExperiment that use this service Login to add workflows info