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- Soaplab overview
- Soaplab client guide page
- EBI Soaplab server documentation
- Soaplab 2
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Provider:
European Bioinformatics Institute (EBI)
Location:
UNITED KINGDOM
Submitter / Source:
Gilles (29 days ago)
Base URL:
http://www.ebi.ac.uk/soaplab/services/protein_motifs.eyinoyang
WSDL Location:
http://www.ebi.ac.uk/soaplab/services/protein_motifs.eyinoyang?wsdl(download last cached WSDL file)
Documentation URL(s): None Login to add a documentation URL Description(s): No description(s) yet Login to add a description Details (from Soaplab server): from Soaplab server(8 days ago)
- ds_lsr_analysis :
- analysis :
- name : eyinoyang
- output :
- type : Protein Motifs
- version : 6.3.0
- installation : Soaplab2 default installation
- description : Reports O-(beta)-GlcNAc attachment sites
- input :
- analysis_extension :
- analysis :
- ds_lsr_analysis :
- analysis :
- name : eyinoyang
- output :
- type : Protein Motifs
- version : 6.3.0
- installation : Soaplab2 default installation
- description : Reports O-(beta)-GlcNAc attachment sites
- input :
- name : plot
- default : false
- mandatory : false
- type : boolean
- name : netphos
- default : false
- mandatory : false
- type : boolean
- name : threshold
- default : 0.5
- mandatory : false
- type : float
- analysis_extension :
- parameter :
- data :
- list :
- list_item :
- level : 0
- value : abi
- level : 0
- value : ace
- level : 0
- value : acedb
- level : 0
- value : bam
- level : 0
- value : biomart
- level : 0
- value : clustal
- level : 0
- value : codata
- level : 0
- value : dbid
- level : 0
- value : embl
- level : 0
- value : ensembl
- level : 0
- value : experiment
- level : 0
- value : fasta
- level : 0
- value : fastq
- level : 0
- value : fastq-illumina
- level : 0
- value : fastq-sanger
- level : 0
- value : fastq-solexa
- level : 0
- value : fitch
- level : 0
- value : gcg
- level : 0
- value : genbank
- level : 0
- value : genpept
- level : 0
- value : gff2
- level : 0
- value : gff3
- level : 0
- value : gifasta
- level : 0
- value : hennig86
- level : 0
- value : ig
- level : 0
- value : igstrict
- level : 0
- value : jackknifer
- level : 0
- value : mase
- level : 0
- value : mega
- level : 0
- value : msf
- level : 0
- value : nbrf
- level : 0
- value : nexus
- level : 0
- value : pdb
- level : 0
- value : pdbnuc
- level : 0
- value : pdbnucseq
- level : 0
- value : pdbseq
- level : 0
- value : pearson
- level : 0
- value : phylip
- level : 0
- value : phylipnon
- level : 0
- value : raw
- level : 0
- value : refseqp
- level : 0
- value : sam
- level : 0
- value : selex
- level : 0
- value : staden
- level : 0
- value : stockholm
- level : 0
- value : strider
- level : 0
- value : swiss
- level : 0
- value : text
- level : 0
- value : treecon
- type : full
- list_item :
- list :
- base :
- data :
- result :
- iotype : output
- base :
- base :
- ordering : 5
- name : plot
- option :
- name : EDAM:
- value : Generic boolean
- type : normal
- qualifier : plot
- default : false
- mandatory : false
- type : boolean
- prompt : Produce graphics
- standard :
- list :
- name : Output format
- list_item :
- shown_as : short
- level : 0
- value : short
- shown_as : long
- level : 0
- value : long
- type : full
- repeatable :
- list :
- base :
- base :
- ordering : 7
- name : netphos
- option :
- name : EDAM:
- value : Generic boolean
- type : normal
- qualifier : netphos
- default : false
- mandatory : false
- type : boolean
- prompt : Run netphos and predict Yin-Yang sites
- range :
- format : %f
- max : 1.0
- min : 0.0
- repeatable :
- base :
- ordering : 8
- name : threshold
- option :
- name : EDAM:
- value : Generic float
- type : normal
- name : scalemax
- value : 1.0
- type : style
- name : scalemin
- value : 0.0
- type : style
- qualifier : threshold
- default : 0.5
- mandatory : false
- type : float
- prompt : Report netphos only scores above this value
- data :
- option :
- name : emboss
- value : true
- type : normal
- name : installation
- value : Soaplab2 default installation
- type : normal
- name : version
- value : 6.3.0
- type : normal
- app_info :
- category : protein_motifs
- help_url : http://emboss.sourceforge.net/apps/release/6.3/emboss/apps/eyinoyang.html
- event :
- action :
- id : _E_1
- parameter :
- analysis :
License(s): None Login to add license info Cost: No info yet Login to add cost info Usage Conditions: No info yet Login to add usage conditions info Contact Info: None Login to add contact info Publications: for this service. This can be a URI to the publication and/or a DOI. None Login to add publication info Citations: None Login to add a citation