EMBOSS wossname SOAP Soaplab

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About Soaplab

Soaplab services are command line applications, wrapped as SOAP services, and served from a Soaplab server. All Soaplab services have the same generic set of SOAP operations (depending on the Soaplab version) as they all share a standardised interface.

Certain tools, like the Taverna workflow workbench, provide automatic support for the Soaplab way of executing these services. In some cases you will need to use the Soaplab Server Base URL rather than the WSDL location in these tools.
More information on Soaplab clients is available here.

Further documentation on Soaplab services is available:

Provider:
European Bioinformatics Institute (EMBL-EBI)

Location:
United Kingdom

Submitter/Source:
SoapLab Support (over 11 years ago)

Base URL:
http://www.ebi.ac.uk:80/soaplab/typed/services/information.wossname

WSDL Location:
http://www.ebi.ac.uk/soaplab/typed/services/information.wossname?wsdl(download last cached WSDL file)

Documentation URL(s): SoapLab Support (over 10 years ago) http://emboss.sourceforge.net/apps/release/6.0/emboss/apps/wossname.html Login to add a documentation URL Description(s): from provider’s description doc (over 10 years ago) Finds programs by keywords in their short description

SoapLab Support(over 10 years ago)

Finds programs by keywords in their short description

Login to add a description ELIXIR Description(s): No info yet Login to add an elixir description Details (from Soaplab server): from Soaplab server(over 10 years ago)

  • ds_lsr_analysis :
    • analysis :
      • name : wossname
      • installation : Soaplab2 default installation
      • type : Information
      • output :
      • description : Finds programs by keywords in their short description
      • version : 6.1.0
      • analysis_extension :
      • input :

Show all

  • ds_lsr_analysis :
    • analysis :
      • name : wossname
      • installation : Soaplab2 default installation
      • type : Information
      • output :
      • description : Finds programs by keywords in their short description
      • version : 6.1.0
      • analysis_extension :
        • option :
          • name : emboss
          • type : normal
          • value : true
          • name : installation
          • type : normal
          • value : Soaplab2 default installation
          • name : version
          • type : normal
          • value : 6.1.0
        • event :
          • action :
          • id : _E_1
        • app_info :
          • category : information
          • help_url : http://emboss.sourceforge.net/apps/release/6.1/emboss/apps/wossname.html
        • parameter :
          • standard :
            • repeatable :
          • base :
          • base :
            • name : explode
            • help : The groups that EMBOSS applications belong to have two forms, exploded and not exploded. The exploded group names are more numerous and often vaguely phrased than the non-exploded ones. The exploded names are formed from definitions of the group names that start like NAME1:NAME2 and which are then expanded into many combinations of the names as: ‘NAME1’, ‘NAME2’, ‘NAME1 NAME2′, NAME2 NAME1’. The non-expanded names are simply like: ‘NAME1 NAME2’.
            • default : false
            • mandatory : false
            • qualifier : explode
            • prompt : Use the expanded group names
            • type : boolean
            • ordering : 4
          • base :
            • name : allmatch
            • help : By default, all words in the search string must match. This option searches for a match to any word in a list of possibilities
            • default : false
            • mandatory : false
            • qualifier : allmatch
            • prompt : Match all words in the search string
            • type : boolean
            • ordering : 5
          • base :
            • name : showkeywords
            • default : false
            • mandatory : false
            • qualifier : showkeywords
            • prompt : Show keywords with program documentation
            • type : boolean
            • ordering : 6
          • base :
            • name : emboss
            • help : If you use this option then EMBOSS program documentation will be searched. If this option is set to be false, then only the EMBASSY programs will be searched (if the -embassy option is true). EMBASSY programs are not strictly part of EMBOSS, but use the same code libraries and share the same look and feel, but are generally developed by people who wish the programs to be outside of the GNU Public Licence scheme
            • default : false
            • mandatory : false
            • qualifier : emboss
            • prompt : Search the EMBOSS programs
            • type : boolean
            • ordering : 9
          • base :
            • name : embassy
            • help : If you use this option then EMBASSY program documentation will be searched. If this option is set to be false, then only the EMBOSS programs will be searched (if the -emboss option is true). EMBASSY programs are not strictly part of EMBOSS, but use the same code libraries and share the same look and feel, but are generally developed by people who wish the programs to be outside of the GNU Public Licence scheme
            • default : false
            • mandatory : false
            • qualifier : embassy
            • prompt : Search the EMBASSY programs
            • type : boolean
            • ordering : 10
          • standard :
            • repeatable :
          • base :
          • base :
            • name : colon
            • help : The groups that EMBOSS applications belong to up to two levels, for example the primary group ‘ALIGNMENT’ has several sub-groups, or second-level groups, e.g.: CONSENSUS, DIFFERENCES, DOT PLOTS, GLOBAL, LOCAL, MULTIPLE. To aid programs that parse the output of wossname that require the names of these subgroups, a colon ‘:’ will be placed between the first and second level of the group name if this option is true. Note: This does not apply if the group names have been exploded with the ‘explode’ option.
            • default : false
            • mandatory : false
            • qualifier : colon
            • prompt : Put a colon in the group name between two levels
            • type : boolean
            • ordering : 12
          • base :
            • name : gui
            • help : This option is intended to help those who are designing Graphical User Interfaces to the EMBOSS applications. Some EMBOSS programs are inappropriate for running in a GUI, these include other menu programs and interactive editors. This option allows you to only report those programs that can be run from a GUI
            • default : false
            • mandatory : false
            • qualifier : gui
            • prompt : Only report those applications that can run in a GUI
            • type : boolean
            • ordering : 13
          • data :
            • result :
            • iotype : stdout
          • base :
          • base :
            • name : html
            • help : If you are sending the output to a file, this will format it for displaying as a table in a WWW document.
            • default : false
            • mandatory : false
            • qualifier : html
            • prompt : Format the output for HTML
            • type : boolean
            • ordering : 18
          • base :
            • name : groups
            • help : If you use this option, then only the group names will output to the file
            • default : false
            • mandatory : false
            • qualifier : groups
            • prompt : Output only the group names
            • type : boolean
            • ordering : 20
          • base :
            • name : alphabetic
            • help : If you use this option, then you will get a single list of the program names and descriptions instead of the programs being listed in their functional groups.
            • default : false
            • mandatory : false
            • qualifier : alphabetic
            • prompt : Output an alphabetic list of programs
            • type : boolean
            • ordering : 21
      • input :
        • name : explode
        • default : false
        • mandatory : false
        • type : boolean
        • name : allmatch
        • default : false
        • mandatory : false
        • type : boolean
        • name : showkeywords
        • default : false
        • mandatory : false
        • type : boolean
        • name : emboss
        • default : false
        • mandatory : false
        • type : boolean
        • name : embassy
        • default : false
        • mandatory : false
        • type : boolean
        • name : colon
        • default : false
        • mandatory : false
        • type : boolean
        • name : gui
        • default : false
        • mandatory : false
        • type : boolean
        • name : html
        • default : false
        • mandatory : false
        • type : boolean
        • name : groups
        • default : false
        • mandatory : false
        • type : boolean
        • name : alphabetic
        • default : false
        • mandatory : false
        • type : boolean

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