This looks like a Soaplab service. Click here for more info and guidance on how to use this service
About Soaplab
Soaplab services are command line applications, wrapped as SOAP services, and served from a Soaplab server. All Soaplab services have the same generic set of SOAP operations (depending on the Soaplab version) as they all share a standardised interface.
Certain tools, like the Taverna workflow workbench, provide automatic support for the Soaplab way of executing these services. In some cases you will need to use the Soaplab Server Base URL rather than the WSDL location in these tools.
More information on Soaplab clients is available here.
Further documentation on Soaplab services is available:
- Soaplab overview
- Soaplab client guide page
- EBI Soaplab server documentation
- Soaplab 2
- Sourceforge site for EMBOSS Soaplab services
Provider:
European Bioinformatics Institute (EBI)
Location:
United Kingdom
Submitter / Source:
uludag (over 2 years ago)
Base URL:
http://www.ebi.ac.uk:80/soaplab/typed/services/information.infoalign
WSDL Location:
http://www.ebi.ac.uk/soaplab/typed/services/information.infoalign?wsdl(download last cached WSDL file)
Documentation URL(s): None Login to add a documentation URL Description(s): from provider’s description doc (about 1 year ago) Display basic information about a multiple sequence alignment
Login to add a description Details (from Soaplab server): from Soaplab server(about 1 year ago)
- ds_lsr_analysis :
- analysis :
- name : infoalign
- output :
- version : 6.1.0
- type : Alignment Multiple, Information
- installation : Soaplab2 default installation
- description : Display basic information about a multiple sequence alignment
- input :
- analysis_extension :
- analysis :
- ds_lsr_analysis :
- analysis :
- name : infoalign
- output :
- version : 6.1.0
- type : Alignment Multiple, Information
- installation : Soaplab2 default installation
- description : Display basic information about a multiple sequence alignment
- input :
- name : plurality
- default : 50.0
- mandatory : false
- type : float
- name : identity
- default : 0.0
- mandatory : false
- type : float
- name : html
- default : false
- mandatory : false
- type : boolean
- name : only
- default : false
- mandatory : false
- type : boolean
- name : heading
- default : false
- mandatory : false
- type : boolean
- name : usa
- default : false
- mandatory : false
- type : boolean
- name : name
- default : false
- mandatory : false
- type : boolean
- name : seqlength
- default : false
- mandatory : false
- type : boolean
- name : alignlength
- default : false
- mandatory : false
- type : boolean
- name : gaps
- default : false
- mandatory : false
- type : boolean
- name : gapcount
- default : false
- mandatory : false
- type : boolean
- name : idcount
- default : false
- mandatory : false
- type : boolean
- name : simcount
- default : false
- mandatory : false
- type : boolean
- name : diffcount
- default : false
- mandatory : false
- type : boolean
- name : change
- default : false
- mandatory : false
- type : boolean
- name : weight
- default : false
- mandatory : false
- type : boolean
- name : description
- default : false
- mandatory : false
- type : boolean
- analysis_extension :
- parameter :
- data :
- list :
- list_item :
- level : 0
- value : gcg
- level : 0
- value : gcg8
- level : 0
- value : embl
- level : 0
- value : swiss
- level : 0
- value : fasta
- level : 0
- value : ncbi
- level : 0
- value : genbank
- level : 0
- value : nbrf
- level : 0
- value : pir
- level : 0
- value : codata
- level : 0
- value : strider
- level : 0
- value : clustal
- level : 0
- value : phylip
- level : 0
- value : acedb
- level : 0
- value : msf
- level : 0
- value : jackknifer
- level : 0
- value : jackknifernon
- level : 0
- value : nexus
- level : 0
- value : nexusnon
- level : 0
- value : treecon
- level : 0
- value : mega
- level : 0
- value : meganon
- level : 0
- value : ig
- level : 0
- value : staden
- level : 0
- value : text
- level : 0
- value : raw
- type : full
- list_item :
- list :
- base :
- data :
- result :
- extension : infoalign
- iotype : output
- base :
- data :
- ioformat : unspecified
- iotype : input
- repeatable :
- base :
- standard :
- repeatable :
- base :
- range :
- format : %f
- max : 100.0
- min : 0.0
- repeatable :
- base :
- ordering : 7
- name : plurality
- option :
- name : scalemax
- value : 100.0
- type : style
- name : scalemin
- value : 0.0
- type : style
- help : Set a cut-off for the % of positive scoring matches below which there is no consensus. The default plurality is taken as 50% of the total weight of all the sequences in the alignment.
- qualifier : plurality
- default : 50.0
- mandatory : false
- type : float
- prompt : Plurality check % for consensus
- range :
- format : %f
- max : 100.0
- min : 0.0
- repeatable :
- base :
- ordering : 8
- name : identity
- option :
- name : scalemax
- value : 100.0
- type : style
- name : scalemin
- value : 0.0
- type : style
- help : Provides the facility of setting the required number of identities at a position for it to give a consensus. Therefore, if this is set to 100% only columns of identities contribute to the consensus.
- qualifier : identity
- default : 0.0
- mandatory : false
- type : float
- prompt : Required % of identities at a position fro consensus
- base :
- ordering : 12
- name : html
- qualifier : html
- default : false
- mandatory : false
- type : boolean
- prompt : Format output as an HTML table
- base :
- ordering : 13
- name : only
- help : This is a way of shortening the command line if you only want a few things to be displayed. Instead of specifying: ‘-nohead -nousa -noname -noalign -nogaps -nogapcount -nosimcount -noidcount -nodiffcount -noweight’ to get only the sequence length output, you can specify ‘-only -seqlength’
- qualifier : only
- default : false
- mandatory : false
- type : boolean
- prompt : Display the specified columns
- base :
- ordering : 14
- name : heading
- option :
- name : calculated_default
- value : !${only}
- type : normal
- qualifier : heading
- default : false
- mandatory : false
- type : boolean
- prompt : Display column headings
- base :
- ordering : 15
- name : usa
- option :
- name : calculated_default
- value : !${only}
- type : normal
- qualifier : usa
- default : false
- mandatory : false
- type : boolean
- prompt : Display the USA of the sequence
- base :
- ordering : 16
- name : name
- option :
- name : calculated_default
- value : !${only}
- type : normal
- qualifier : name
- default : false
- mandatory : false
- type : boolean
- prompt : Display ‘name’ column
- base :
- ordering : 17
- name : seqlength
- option :
- name : calculated_default
- value : !${only}
- type : normal
- qualifier : seqlength
- default : false
- mandatory : false
- type : boolean
- prompt : Display ‘seqlength’ column
- base :
- ordering : 18
- name : alignlength
- option :
- name : calculated_default
- value : !${only}
- type : normal
- qualifier : alignlength
- default : false
- mandatory : false
- type : boolean
- prompt : Display ‘alignlength’ column
- base :
- ordering : 19
- name : gaps
- option :
- name : calculated_default
- value : !${only}
- type : normal
- qualifier : gaps
- default : false
- mandatory : false
- type : boolean
- prompt : Display number of gaps
- base :
- ordering : 20
- name : gapcount
- option :
- name : calculated_default
- value : !${only}
- type : normal
- qualifier : gapcount
- default : false
- mandatory : false
- type : boolean
- prompt : Display number of gap positions
- base :
- ordering : 21
- name : idcount
- option :
- name : calculated_default
- value : !${only}
- type : normal
- qualifier : idcount
- default : false
- mandatory : false
- type : boolean
- prompt : Display number of identical positions
- base :
- ordering : 22
- name : simcount
- option :
- name : calculated_default
- value : !${only}
- type : normal
- qualifier : simcount
- default : false
- mandatory : false
- type : boolean
- prompt : Display number of similar positions
- base :
- ordering : 23
- name : diffcount
- option :
- name : calculated_default
- value : !${only}
- type : normal
- qualifier : diffcount
- default : false
- mandatory : false
- type : boolean
- prompt : Display number of different positions
- base :
- ordering : 24
- name : change
- option :
- name : calculated_default
- value : !${only}
- type : normal
- qualifier : change
- default : false
- mandatory : false
- type : boolean
- prompt : Display % number of changed positions
- base :
- ordering : 25
- name : weight
- option :
- name : calculated_default
- value : !${only}
- type : normal
- qualifier : weight
- default : false
- mandatory : false
- type : boolean
- prompt : Display ‘weight’ column
- base :
- ordering : 26
- name : description
- option :
- name : calculated_default
- value : !${only}
- type : normal
- qualifier : description
- default : false
- mandatory : false
- type : boolean
- prompt : Display ‘description’ column
- data :
- option :
- name : emboss
- value : true
- type : normal
- name : installation
- value : Soaplab2 default installation
- type : normal
- name : version
- value : 6.1.0
- type : normal
- app_info :
- category : alignment_multiple
- help_url : http://emboss.sourceforge.net/apps/release/6.1/emboss/apps/infoalign.html
- event :
- action :
- id : _E_1
- parameter :
- analysis :
License(s): None Login to add license info Cost: No info yet Login to add cost info Usage Conditions: No info yet Login to add usage conditions info Contact Info: None Login to add contact info Publications: for this service. This can be a URI to the publication and/or a DOI. None Login to add publication info Citations: None Login to add a citation