rocon SOAP Soaplab

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About Soaplab

Soaplab services are command line applications, wrapped as SOAP services, and served from a Soaplab server. All Soaplab services have the same generic set of SOAP operations (depending on the Soaplab version) as they all share a standardised interface.

Certain tools, like the Taverna workflow workbench, provide automatic support for the Soaplab way of executing these services. In some cases you will need to use the Soaplab Server Base URL rather than the WSDL location in these tools.
More information on Soaplab clients is available here.

Further documentation on Soaplab services is available:

• Soaplab overview
• Soaplab client guide page
• EBI Soaplab server documentation
• Soaplab 2
• Sourceforge site for EMBOSS Soaplab services

Provider:
European Bioinformatics Institute (EMBL-EBI)

Location:
UNITED KINGDOM

Submitter/Source:
Mike Mayer (over 9 years ago)

Base URL:
http://www.ebi.ac.uk/soaplab/services/protein_3d_structure.rocon

WSDL Location:
http://www.ebi.ac.uk/soaplab/services/protein_3d_structure.rocon?wsdl(download last cached WSDL file)

Documentation URL(s): None Login to add a documentation URL Description(s): No description(s) yet Login to add a description ELIXIR Description(s): No info yet Login to add an elixir description Details (from Soaplab server): from Soaplab server(over 8 years ago)

• ds_lsr_analysis :
  • analysis :
    • name : rocon
    • output :
    • installation : Soaplab2 default installation
    • version : 6.3.0
    • type : Protein 3D Structure
    • description : Generates a hits file from comparing two DHF files
    • analysis_extension :
    • input :

Show all

• ds_lsr_analysis :
  • analysis :
    • name : rocon
    • output :
    • installation : Soaplab2 default installation
    • version : 6.3.0
    • type : Protein 3D Structure
    • description : Generates a hits file from comparing two DHF files
    • analysis_extension :
      • parameter :
        • data :
          • ioformat : unspecified
          • iotype : input
          • repeatable :
        • base :
        • data :
          • ioformat : unspecified
          • iotype : input
          • repeatable :
        • base :
        • range :
          • format : %d
          • repeatable :
        • base :
          • name : thresh
          • ordering : 5
          • option :
            • name : EDAM:
            • type : normal
            • value : Generic integer
          • help : This option specifies the overlap threshold for hits. This is the minimum length (residues) of overlap required for two hits with the accession number to be counted as the same hit. The accession number of the hit, and the start and end point respectively of the hit relative to full length sequence are provided in the lists of hits in the DHF input file. The overlap is determined from the start and end points of the hit. For example two hits with the start and end points of 1-100 and 91-190 respectively are considered to be the same hit if they have the same accession numbers and the overlap threshold is 10 or less.
          • default : 10
          • qualifier : thresh
          • mandatory : false
          • prompt : Overlap threshold for hits.
          • type : long
        • standard :
          • list :
            • list_item :
              • shown_as : Family classification scheme
              • level : 0
              • value : 1
              • shown_as : (Not yet available)
              • level : 0
              • value : 2
            • name : Classification scheme to use
            • type : full
          • repeatable :
        • base :
        • data :
          • result :
          • extension : dhf
          • iotype : output
        • base :
      • option :
        • name : emboss
        • type : normal
        • value : true
        • name : installation
        • type : normal
        • value : Soaplab2 default installation
        • name : version
        • type : normal
        • value : 6.3.0
      • app_info :
        • category : protein_3d_structure
        • help_url : http://emboss.sourceforge.net/apps/release/6.3/emboss/apps/rocon.html
      • event :
        • action :
        • id : _E_1
    • input :
      • name : thresh
      • default : 10
      • mandatory : false
      • type : long

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