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About Soaplab
Soaplab services are command line applications, wrapped as SOAP services, and served from a Soaplab server. All Soaplab services have the same generic set of SOAP operations (depending on the Soaplab version) as they all share a standardised interface.
Certain tools, like the Taverna workflow workbench, provide automatic support for the Soaplab way of executing these services. In some cases you will need to use the Soaplab Server Base URL rather than the WSDL location in these tools.
More information on Soaplab clients is available here.
Further documentation on Soaplab services is available:
- Soaplab overview
- Soaplab client guide page
- EBI Soaplab server documentation
- Soaplab 2
- Sourceforge site for EMBOSS Soaplab services
Provider:
European Bioinformatics Institute (EMBL-EBI)
Location:
UNITED KINGDOM
Submitter/Source:
Mike Mayer (over 9 years ago)
Base URL:
http://www.ebi.ac.uk/soaplab/services/display.lindna
WSDL Location:
http://www.ebi.ac.uk/soaplab/services/display.lindna?wsdl(download last cached WSDL file)
Documentation URL(s): None Login to add a documentation URL Description(s): No description(s) yet Login to add a description ELIXIR Description(s): No info yet Login to add an elixir description Details (from Soaplab server): from Soaplab server(about 8 years ago)
- ds_lsr_analysis :
- analysis :
- name : lindna
- output :
- installation : Soaplab2 default installation
- version : 6.3.0
- type : Display
- description : Draws linear maps of DNA constructs
- analysis_extension :
- input :
- analysis :
- ds_lsr_analysis :
- analysis :
- name : lindna
- output :
- installation : Soaplab2 default installation
- version : 6.3.0
- type : Display
- description : Draws linear maps of DNA constructs
- analysis_extension :
- parameter :
- data :
- ioformat : unspecified
- iotype : input
- repeatable :
- base :
- base :
- name : ruler
- ordering : 8
- option :
- name : EDAM:0002135
- type : normal
- value : data Toggle
- default : false
- qualifier : ruler
- mandatory : false
- prompt : Draw a ruler
- type : boolean
- choice_list :
- grouptype : zero_or_more
- separator : ,
- base :
- name : blocktype_Open
- ordering : 10
- qualifier : Open
- default : false
- mandatory : false
- type : boolean
- prompt : Open blocks
- name : blocktype_Filled
- ordering : 11
- qualifier : Filled
- default : true
- mandatory : false
- type : boolean
- prompt : Filled blocks
- name : blocktype_Outline
- ordering : 12
- qualifier : Outline
- default : false
- mandatory : false
- type : boolean
- prompt : Black border
- base :
- standard :
- list :
- list_item :
- shown_as : Portable Network Graphics (png)
- level : 0
- value : png
- shown_as : Postscript
- level : 0
- value : colourps
- type : full
- list_item :
- repeatable :
- list :
- base :
- range :
- format : %d
- min : 1
- repeatable :
- base :
- name : maxgroups
- ordering : 4
- option :
- name : EDAM:0001773
- type : normal
- value : data Tool-specific parameter
- name : scalemin
- type : style
- value : 1
- default : 20
- qualifier : maxgroups
- mandatory : false
- prompt : Maximum number of groups
- type : long
- range :
- format : %d
- min : 1
- repeatable :
- base :
- name : maxlabels
- ordering : 5
- option :
- name : EDAM:0001773
- type : normal
- value : data Tool-specific parameter
- name : scalemin
- type : style
- value : 1
- default : 10000
- qualifier : maxlabels
- mandatory : false
- prompt : Maximum number of labels
- type : long
- choice_list :
- grouptype : zero_or_more
- separator : ,
- base :
- name : intersymbol_Straight
- ordering : 14
- qualifier : Straight
- default : true
- mandatory : false
- type : boolean
- name : intersymbol_Up
- ordering : 15
- qualifier : Up
- default : false
- mandatory : false
- type : boolean
- name : intersymbol_Down
- ordering : 16
- qualifier : Down
- default : false
- mandatory : false
- type : boolean
- name : intersymbol_No
- ordering : 17
- qualifier : No
- default : false
- mandatory : false
- type : boolean
- base :
- range :
- format : %d
- max : 15
- min : 0
- repeatable :
- base :
- name : intercolour
- ordering : 18
- option :
- name : EDAM:0002151
- type : normal
- value : data Colour
- name : scalemax
- type : style
- value : 15
- default : 1
- qualifier : intercolour
- mandatory : false
- prompt : Colour of junctions between blocks (enter a colour number)
- type : long
- base :
- name : interticks
- ordering : 19
- option :
- name : EDAM:0002135
- type : normal
- value : data Toggle
- default : false
- qualifier : interticks
- mandatory : false
- prompt : Horizontal junctions between ticks
- type : boolean
- range :
- format : %d
- min : 0
- repeatable :
- base :
- name : gapsize
- ordering : 20
- option :
- name : EDAM:0002152
- type : normal
- value : data Rendering parameter
- default : 500
- qualifier : gapsize
- mandatory : false
- prompt : Interval between ticks in the ruler
- type : long
- base :
- name : ticklines
- ordering : 21
- option :
- name : EDAM:0002135
- type : normal
- value : data Toggle
- default : false
- qualifier : ticklines
- mandatory : false
- prompt : Vertical lines at the ruler’s ticks
- type : boolean
- range :
- format : %f
- min : 0.0
- repeatable :
- base :
- name : textheight
- ordering : 22
- option :
- name : EDAM:0002152
- type : normal
- value : data Rendering parameter
- name : scalemin
- type : style
- value : 0.0
- help : Height of text. Enter a number <1.0 or >1.0 to decrease or increase the size, respectively
- default : 1.0
- qualifier : textheight
- mandatory : false
- prompt : Height of text multiplier
- type : float
- range :
- format : %f
- min : 0.0
- repeatable :
- base :
- name : textlength
- ordering : 23
- option :
- name : EDAM:0002152
- type : normal
- value : data Rendering parameter
- name : scalemin
- type : style
- value : 0.0
- help : Length of text. Enter a number <1.0 or >1.0 to decrease or increase the size, respectively
- default : 1.0
- qualifier : textlength
- mandatory : false
- prompt : Length of text multiplier
- type : float
- range :
- format : %f
- min : 0.0
- repeatable :
- base :
- name : margin
- ordering : 24
- option :
- name : EDAM:0002152
- type : normal
- value : data Rendering parameter
- name : scalemin
- type : style
- value : 0.0
- help : Width of left margin. This is the region left to the groups where the names of the groups are displayed. Enter a number <1.0 or >1.0 to decrease or increase the size, respectively
- default : 1.0
- qualifier : margin
- mandatory : false
- prompt : Width of left margin multiplier
- type : float
- range :
- format : %f
- min : 0.0
- repeatable :
- base :
- name : tickheight
- ordering : 25
- option :
- name : EDAM:0002152
- type : normal
- value : data Rendering parameter
- name : scalemin
- type : style
- value : 0.0
- help : Height of ticks. Enter a number <1.0 or >1.0 to decrease or increase the size, respectively
- default : 1.0
- qualifier : tickheight
- mandatory : false
- prompt : Height of ticks multiplier
- type : float
- range :
- format : %f
- min : 0.0
- repeatable :
- base :
- name : blockheight
- ordering : 26
- option :
- name : EDAM:0002152
- type : normal
- value : data Rendering parameter
- name : scalemin
- type : style
- value : 0.0
- help : Height of blocks. Enter a number <1.0 or >1.0 to decrease or increase the size, respectively
- default : 1
- qualifier : blockheight
- mandatory : false
- prompt : Height of blocks multilpier
- type : float
- range :
- format : %f
- min : 0.0
- repeatable :
- base :
- name : rangeheight
- ordering : 27
- option :
- name : EDAM:0002152
- type : normal
- value : data Rendering parameter
- name : scalemin
- type : style
- value : 0.0
- help : Height of range ends. Enter a number <1.0 or >1.0 to decrease or increase the size, respectively
- default : 1.0
- qualifier : rangeheight
- mandatory : false
- prompt : Height of range ends multiplier
- type : float
- range :
- format : %f
- min : 0.0
- repeatable :
- base :
- name : gapgroup
- ordering : 28
- option :
- name : EDAM:0002152
- type : normal
- value : data Rendering parameter
- name : scalemin
- type : style
- value : 0.0
- help : Space between groups. Enter a number <1.0 or >1.0 to decrease or increase the size, respectively
- default : 1.0
- qualifier : gapgroup
- mandatory : false
- prompt : Space between groups mutliplier
- type : float
- range :
- format : %f
- min : 0.0
- repeatable :
- base :
- name : postext
- ordering : 29
- option :
- name : EDAM:0002152
- type : normal
- value : data Rendering parameter
- name : scalemin
- type : style
- value : 0.0
- help : Space between text and ticks, blocks, and ranges. Enter a number <1.0 or >1.0 to decrease or increase the size, respectively
- default : 1.0
- qualifier : postext
- mandatory : false
- prompt : Space between text and ticks, blocks, and ranges multiplier
- type : float
- data :
- result :
- iotype : output
- base :
- data :
- result :
- iotype : output
- base :
- name : Graphics_in_PNG
- ordering : 30
- option :
- name : EDAM:0001278
- type : normal
- value : data Genetic map
- name : allow_non_existent
- type : normal
- value : true
- name : datatype
- type : normal
- value : bindata
- name : mimetype
- type : normal
- value : image/png
- name : nodisplay
- type : style
- value : true
- method : %%%Graphics_in_PNG%%% ${Graphics_in_PNG}
- qualifier : Graphics_in_PNG
- mandatory : false
- type : byte[][]
- data :
- option :
- name : EDAM:0000092
- type : normal
- value : topic Visualisation and rendering
- name : EDAM:0000096
- type : normal
- value : topic Nucleic acid sequence analysis
- name : EDAM:0000577
- type : normal
- value : operation DNA linear map drawing
- name : emboss
- type : normal
- value : true
- name : installation
- type : normal
- value : Soaplab2 default installation
- name : version
- type : normal
- value : 6.3.0
- app_info :
- category : display
- help_url : http://emboss.sourceforge.net/apps/release/6.3/emboss/apps/lindna.html
- event :
- action :
- id : _E_1
- parameter :
- input :
- name : ruler
- default : false
- mandatory : false
- type : boolean
- name : blocktype_Open
- default : false
- mandatory : false
- type : boolean
- name : blocktype_Filled
- default : true
- mandatory : false
- type : boolean
- name : blocktype_Outline
- default : false
- mandatory : false
- type : boolean
- name : maxgroups
- default : 20
- mandatory : false
- type : long
- name : maxlabels
- default : 10000
- mandatory : false
- type : long
- name : intersymbol_Straight
- default : true
- mandatory : false
- type : boolean
- name : intersymbol_Up
- default : false
- mandatory : false
- type : boolean
- name : intersymbol_Down
- default : false
- mandatory : false
- type : boolean
- name : intersymbol_No
- default : false
- mandatory : false
- type : boolean
- name : intercolour
- default : 1
- mandatory : false
- type : long
- name : interticks
- default : false
- mandatory : false
- type : boolean
- name : gapsize
- default : 500
- mandatory : false
- type : long
- name : ticklines
- default : false
- mandatory : false
- type : boolean
- name : textheight
- default : 1.0
- mandatory : false
- type : float
- name : textlength
- default : 1.0
- mandatory : false
- type : float
- name : margin
- default : 1.0
- mandatory : false
- type : float
- name : tickheight
- default : 1.0
- mandatory : false
- type : float
- name : blockheight
- default : 1
- mandatory : false
- type : float
- name : rangeheight
- default : 1.0
- mandatory : false
- type : float
- name : gapgroup
- default : 1.0
- mandatory : false
- type : float
- name : postext
- default : 1.0
- mandatory : false
- type : float
- analysis :
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