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Provider:
European Bioinformatics Institute (EMBL-EBI)
Location:
UNITED KINGDOM
Submitter/Source:
Mike Mayer (over 9 years ago)
Base URL:
http://www.ebi.ac.uk/soaplab/services/feature_tables.twofeat
WSDL Location:
http://www.ebi.ac.uk/soaplab/services/feature_tables.twofeat?wsdl(download last cached WSDL file)
Documentation URL(s): None Login to add a documentation URL Description(s): No description(s) yet Login to add a description ELIXIR Description(s): No info yet Login to add an elixir description Details (from Soaplab server): from Soaplab server(over 8 years ago)
- ds_lsr_analysis :
- analysis :
- name : twofeat
- output :
- installation : Soaplab2 default installation
- version : 6.3.0
- type : Feature tables
- description : Finds neighbouring pairs of features in sequence(s)
- analysis_extension :
- input :
- analysis :
- ds_lsr_analysis :
- analysis :
- name : twofeat
- output :
- installation : Soaplab2 default installation
- version : 6.3.0
- type : Feature tables
- description : Finds neighbouring pairs of features in sequence(s)
- analysis_extension :
- parameter :
- data :
- list :
- list_item :
- level : 0
- value : abi
- level : 0
- value : ace
- level : 0
- value : acedb
- level : 0
- value : bam
- level : 0
- value : biomart
- level : 0
- value : clustal
- level : 0
- value : codata
- level : 0
- value : dbid
- level : 0
- value : embl
- level : 0
- value : ensembl
- level : 0
- value : experiment
- level : 0
- value : fasta
- level : 0
- value : fastq
- level : 0
- value : fastq-illumina
- level : 0
- value : fastq-sanger
- level : 0
- value : fastq-solexa
- level : 0
- value : fitch
- level : 0
- value : gcg
- level : 0
- value : genbank
- level : 0
- value : genpept
- level : 0
- value : gff2
- level : 0
- value : gff3
- level : 0
- value : gifasta
- level : 0
- value : hennig86
- level : 0
- value : ig
- level : 0
- value : igstrict
- level : 0
- value : jackknifer
- level : 0
- value : mase
- level : 0
- value : mega
- level : 0
- value : msf
- level : 0
- value : nbrf
- level : 0
- value : nexus
- level : 0
- value : pdb
- level : 0
- value : pdbnuc
- level : 0
- value : pdbnucseq
- level : 0
- value : pdbseq
- level : 0
- value : pearson
- level : 0
- value : phylip
- level : 0
- value : phylipnon
- level : 0
- value : raw
- level : 0
- value : refseqp
- level : 0
- value : sam
- level : 0
- value : selex
- level : 0
- value : staden
- level : 0
- value : stockholm
- level : 0
- value : strider
- level : 0
- value : swiss
- level : 0
- value : text
- level : 0
- value : treecon
- type : full
- list_item :
- list :
- base :
- standard :
- repeatable :
- base :
- standard :
- repeatable :
- base :
- range :
- format : %d
- repeatable :
- base :
- name : minrange
- ordering : 23
- option :
- name : EDAM:0001249
- type : normal
- value : data Sequence length
- help : If this is greater or equal to ‘maxrange’, then no min or max range is specified
- default : 0
- qualifier : minrange
- mandatory : false
- prompt : The minimum distance between the features
- type : long
- range :
- format : %d
- repeatable :
- base :
- name : maxrange
- ordering : 24
- option :
- name : EDAM:0001249
- type : normal
- value : data Sequence length
- help : If this is less than or equal to ‘minrange’, then no min or max range is specified
- default : 0
- qualifier : maxrange
- mandatory : false
- prompt : The maximum distance between the features
- type : long
- data :
- result :
- iotype : output
- base :
- standard :
- repeatable :
- base :
- standard :
- list :
- list_item :
- shown_as : Any sense
- level : 0
- value : 0
- shown_as : Forward sense
- level : 0
- value : +
- shown_as : Reverse sense
- level : 0
- value : –
- name : Sense of first feature
- type : full
- list_item :
- repeatable :
- list :
- base :
- range :
- format : %f
- repeatable :
- base :
- name : aminscore
- ordering : 7
- option :
- name : EDAM:0001772
- type : normal
- value : data Score
- help : If this is greater than or equal to the maximum score, then any score is allowed.
- default : 0.0
- qualifier : aminscore
- mandatory : false
- prompt : Minimum score of first feature
- type : float
- range :
- format : %f
- repeatable :
- base :
- name : amaxscore
- ordering : 8
- option :
- name : EDAM:0001772
- type : normal
- value : data Score
- help : If this is less than or equal to the maximum score, then any score is permitted.
- default : 0.0
- qualifier : amaxscore
- mandatory : false
- prompt : Maximum score of first feature
- type : float
- standard :
- repeatable :
- base :
- standard :
- repeatable :
- base :
- standard :
- repeatable :
- base :
- standard :
- list :
- list_item :
- shown_as : Any sense
- level : 0
- value : 0
- shown_as : Forward sense
- level : 0
- value : +
- shown_as : Reverse sense
- level : 0
- value : –
- name : Sense of second feature
- type : full
- list_item :
- repeatable :
- list :
- base :
- range :
- format : %f
- repeatable :
- base :
- name : bminscore
- ordering : 16
- option :
- name : EDAM:0001772
- type : normal
- value : data Score
- help : If this is greater than or equal to the maximum score, then any score is allowed.
- default : 0.0
- qualifier : bminscore
- mandatory : false
- prompt : Minimum score of second feature
- type : float
- range :
- format : %f
- repeatable :
- base :
- name : bmaxscore
- ordering : 17
- option :
- name : EDAM:0001772
- type : normal
- value : data Score
- help : If this is less than or equal to the maximum score, then any score is permitted.
- default : 0.0
- qualifier : bmaxscore
- mandatory : false
- prompt : Maximum score of second feature
- type : float
- standard :
- repeatable :
- base :
- standard :
- repeatable :
- base :
- standard :
- list :
- list_item :
- shown_as : Any
- level : 0
- value : A
- shown_as : Overlap required
- level : 0
- value : O
- shown_as : No overlaps are allowed
- level : 0
- value : NO
- shown_as : Overlap required but not within
- level : 0
- value : NW
- shown_as : A must be all within B
- level : 0
- value : AW
- shown_as : B must be all within A
- level : 0
- value : BW
- name : Type of overlap required
- type : full
- list_item :
- repeatable :
- list :
- base :
- standard :
- list :
- list_item :
- shown_as : From nearest ends
- level : 0
- value : N
- shown_as : From left ends
- level : 0
- value : L
- shown_as : From right ends
- level : 0
- value : R
- shown_as : From furthest ends
- level : 0
- value : F
- name : Positions from which to measure the distance
- type : full
- list_item :
- repeatable :
- list :
- base :
- standard :
- list :
- list_item :
- shown_as : Any sense
- level : 0
- value : A
- shown_as : Same sense
- level : 0
- value : S
- shown_as : Opposite sense
- level : 0
- value : O
- name : Sense of the features
- type : full
- list_item :
- repeatable :
- list :
- base :
- standard :
- list :
- list_item :
- shown_as : Any
- level : 0
- value : A
- shown_as : Feature A then feature B
- level : 0
- value : AB
- shown_as : Feature B then feature A
- level : 0
- value : BA
- name : Order of the features
- type : full
- list_item :
- repeatable :
- list :
- base :
- base :
- name : twoout
- ordering : 31
- option :
- name : EDAM:0002135
- type : normal
- value : data Toggle
- help : If you set this to be true, then the two features themselves will be written out. If it is left as false, then a single feature will be written out covering the two features you found.
- default : false
- qualifier : twoout
- mandatory : false
- prompt : Do you want the two features written out individually
- type : boolean
- standard :
- repeatable :
- base :
- data :
- option :
- name : EDAM:0000160
- type : normal
- value : topic Sequence features
- name : EDAM:0000255
- type : normal
- value : operation Sequence feature table query
- name : emboss
- type : normal
- value : true
- name : installation
- type : normal
- value : Soaplab2 default installation
- name : version
- type : normal
- value : 6.3.0
- app_info :
- category : feature_tables
- help_url : http://emboss.sourceforge.net/apps/release/6.3/emboss/apps/twofeat.html
- event :
- action :
- id : _E_1
- parameter :
- input :
- name : minrange
- default : 0
- mandatory : false
- type : long
- name : maxrange
- default : 0
- mandatory : false
- type : long
- name : aminscore
- default : 0.0
- mandatory : false
- type : float
- name : amaxscore
- default : 0.0
- mandatory : false
- type : float
- name : bminscore
- default : 0.0
- mandatory : false
- type : float
- name : bmaxscore
- default : 0.0
- mandatory : false
- type : float
- name : twoout
- default : false
- mandatory : false
- type : boolean
- analysis :
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