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About Soaplab
Soaplab services are command line applications, wrapped as SOAP services, and served from a Soaplab server. All Soaplab services have the same generic set of SOAP operations (depending on the Soaplab version) as they all share a standardised interface.
Certain tools, like the Taverna workflow workbench, provide automatic support for the Soaplab way of executing these services. In some cases you will need to use the Soaplab Server Base URL rather than the WSDL location in these tools.
More information on Soaplab clients is available here.
Further documentation on Soaplab services is available:
- Soaplab overview
- Soaplab client guide page
- EBI Soaplab server documentation
- Soaplab 2
- Sourceforge site for EMBOSS Soaplab services
Provider:
European Bioinformatics Institute (EMBL-EBI)
Location:
UNITED KINGDOM
Submitter/Source:
Mike Mayer (over 9 years ago)
Base URL:
http://www.ebi.ac.uk/soaplab/services/information.showdb
WSDL Location:
http://www.ebi.ac.uk/soaplab/services/information.showdb?wsdl(download last cached WSDL file)
Documentation URL(s): None Login to add a documentation URL Description(s): No description(s) yet Login to add a description ELIXIR Description(s): No info yet Login to add an elixir description Details (from Soaplab server): from Soaplab server(over 8 years ago)
- ds_lsr_analysis :
- analysis :
- name : showdb
- output :
- installation : Soaplab2 default installation
- version : 6.3.0
- type : Display, Information
- description : Displays information on configured databases
- analysis_extension :
- input :
- analysis :
- ds_lsr_analysis :
- analysis :
- name : showdb
- output :
- installation : Soaplab2 default installation
- version : 6.3.0
- type : Display, Information
- description : Displays information on configured databases
- analysis_extension :
- parameter :
- standard :
- repeatable :
- base :
- base :
- name : html
- ordering : 5
- option :
- name : EDAM:0002135
- type : normal
- value : data Toggle
- default : false
- qualifier : html
- mandatory : false
- prompt : Format output as an HTML table
- type : boolean
- base :
- name : protein
- ordering : 6
- option :
- name : EDAM:0002135
- type : normal
- value : data Toggle
- default : false
- qualifier : protein
- mandatory : false
- prompt : Display protein databases
- type : boolean
- base :
- name : nucleic
- ordering : 7
- option :
- name : EDAM:0002135
- type : normal
- value : data Toggle
- default : false
- qualifier : nucleic
- mandatory : false
- prompt : Display nucleic acid databases
- type : boolean
- base :
- name : full
- ordering : 8
- option :
- name : EDAM:0002135
- type : normal
- value : data Toggle
- default : false
- qualifier : full
- mandatory : false
- prompt : Display all columns
- type : boolean
- base :
- name : methods
- ordering : 9
- option :
- name : EDAM:0002135
- type : normal
- value : data Toggle
- name : calculated_default
- type : normal
- value : ${full}
- help : This displays the access methods that can be used on this database, for all, query or ID access
- default : false
- qualifier : methods
- mandatory : false
- prompt : Display ‘methods’ column
- type : boolean
- base :
- name : fields
- ordering : 10
- option :
- name : EDAM:0002135
- type : normal
- value : data Toggle
- name : calculated_default
- type : normal
- value : ${full}
- help : This displays the search fields that can be used on this database, other than the standard ‘id’ or ‘acc’ fields.
- default : false
- qualifier : fields
- mandatory : false
- prompt : Display ‘fields’ column
- type : boolean
- base :
- name : defined
- ordering : 11
- option :
- name : EDAM:0002135
- type : normal
- value : data Toggle
- name : calculated_default
- type : normal
- value : ${full}
- help : This displays a short name for the file containing the database definition
- default : false
- qualifier : defined
- mandatory : false
- prompt : Display ‘defined’ column
- type : boolean
- base :
- name : release
- ordering : 12
- option :
- name : EDAM:0002135
- type : normal
- value : data Toggle
- name : calculated_default
- type : normal
- value : ${full}
- default : false
- qualifier : release
- mandatory : false
- prompt : Display ‘release’ column
- type : boolean
- base :
- name : only
- ordering : 15
- option :
- name : EDAM:0002135
- type : normal
- value : data Toggle
- help : This is a way of shortening the command line if you only want a few standard columns to be displayed. Instead of specifying: ‘-nohead -notype -noid -noquery -noall’ to get only the comment output, you can specify ‘-only -comment’
- default : false
- qualifier : only
- mandatory : false
- prompt : Display the specified columns
- type : boolean
- base :
- name : heading
- ordering : 16
- option :
- name : EDAM:0002135
- type : normal
- value : data Toggle
- name : calculated_default
- type : normal
- value : !${only}
- default : false
- qualifier : heading
- mandatory : false
- prompt : Display column headings
- type : boolean
- base :
- name : type
- ordering : 17
- option :
- name : EDAM:0002135
- type : normal
- value : data Toggle
- name : calculated_default
- type : normal
- value : !${only}
- default : false
- qualifier : type
- mandatory : false
- prompt : Display ‘type’ column
- type : boolean
- base :
- name : id
- ordering : 18
- option :
- name : EDAM:0002135
- type : normal
- value : data Toggle
- name : calculated_default
- type : normal
- value : !${only}
- default : false
- qualifier : id
- mandatory : false
- prompt : Display ‘id’ column
- type : boolean
- base :
- name : query
- ordering : 19
- option :
- name : EDAM:0002135
- type : normal
- value : data Toggle
- name : calculated_default
- type : normal
- value : !${only}
- default : false
- qualifier : query
- mandatory : false
- prompt : Display ‘qry’ column
- type : boolean
- base :
- name : all
- ordering : 20
- option :
- name : EDAM:0002135
- type : normal
- value : data Toggle
- name : calculated_default
- type : normal
- value : !${only}
- default : false
- qualifier : all
- mandatory : false
- prompt : Display ‘all’ column
- type : boolean
- base :
- name : comment
- ordering : 21
- option :
- name : EDAM:0002135
- type : normal
- value : data Toggle
- name : calculated_default
- type : normal
- value : !${only}
- default : false
- qualifier : comment
- mandatory : false
- prompt : Display ‘comment’ column
- type : boolean
- data :
- result :
- iotype : stdout
- base :
- standard :
- option :
- name : EDAM:0000088
- type : normal
- value : topic Literature and documentation
- name : EDAM:0000516
- type : normal
- value : operation Database information retrieval
- name : emboss
- type : normal
- value : true
- name : installation
- type : normal
- value : Soaplab2 default installation
- name : version
- type : normal
- value : 6.3.0
- app_info :
- category : display
- help_url : http://emboss.sourceforge.net/apps/release/6.3/emboss/apps/showdb.html
- event :
- action :
- id : _E_1
- parameter :
- input :
- name : html
- default : false
- mandatory : false
- type : boolean
- name : protein
- default : false
- mandatory : false
- type : boolean
- name : nucleic
- default : false
- mandatory : false
- type : boolean
- name : full
- default : false
- mandatory : false
- type : boolean
- name : methods
- default : false
- mandatory : false
- type : boolean
- name : fields
- default : false
- mandatory : false
- type : boolean
- name : defined
- default : false
- mandatory : false
- type : boolean
- name : release
- default : false
- mandatory : false
- type : boolean
- name : only
- default : false
- mandatory : false
- type : boolean
- name : heading
- default : false
- mandatory : false
- type : boolean
- name : type
- default : false
- mandatory : false
- type : boolean
- name : id
- default : false
- mandatory : false
- type : boolean
- name : query
- default : false
- mandatory : false
- type : boolean
- name : all
- default : false
- mandatory : false
- type : boolean
- name : comment
- default : false
- mandatory : false
- type : boolean
- analysis :
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