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About Soaplab
Soaplab services are command line applications, wrapped as SOAP services, and served from a Soaplab server. All Soaplab services have the same generic set of SOAP operations (depending on the Soaplab version) as they all share a standardised interface.
Certain tools, like the Taverna workflow workbench, provide automatic support for the Soaplab way of executing these services. In some cases you will need to use the Soaplab Server Base URL rather than the WSDL location in these tools.
More information on Soaplab clients is available here.
Further documentation on Soaplab services is available:
- Soaplab overview
- Soaplab client guide page
- EBI Soaplab server documentation
- Soaplab 2
- Sourceforge site for EMBOSS Soaplab services
Provider:
European Bioinformatics Institute (EMBL-EBI)
Location:
UNITED KINGDOM
Submitter/Source:
Mike Mayer (over 9 years ago)
Base URL:
http://www.ebi.ac.uk/soaplab/services/information.infoalign
WSDL Location:
http://www.ebi.ac.uk/soaplab/services/information.infoalign?wsdl(download last cached WSDL file)
Documentation URL(s): None Login to add a documentation URL Description(s): No description(s) yet Login to add a description ELIXIR Description(s): No info yet Login to add an elixir description Details (from Soaplab server): from Soaplab server(over 8 years ago)
- ds_lsr_analysis :
- analysis :
- name : infoalign
- output :
- installation : Soaplab2 default installation
- version : 6.3.0
- type : Alignment Multiple, Information
- description : Display basic information about a multiple sequence alignment
- analysis_extension :
- input :
- analysis :
- ds_lsr_analysis :
- analysis :
- name : infoalign
- output :
- installation : Soaplab2 default installation
- version : 6.3.0
- type : Alignment Multiple, Information
- description : Display basic information about a multiple sequence alignment
- analysis_extension :
- parameter :
- data :
- list :
- list_item :
- level : 0
- value : abi
- level : 0
- value : ace
- level : 0
- value : acedb
- level : 0
- value : bam
- level : 0
- value : biomart
- level : 0
- value : clustal
- level : 0
- value : codata
- level : 0
- value : dbid
- level : 0
- value : embl
- level : 0
- value : ensembl
- level : 0
- value : experiment
- level : 0
- value : fasta
- level : 0
- value : fastq
- level : 0
- value : fastq-illumina
- level : 0
- value : fastq-sanger
- level : 0
- value : fastq-solexa
- level : 0
- value : fitch
- level : 0
- value : gcg
- level : 0
- value : genbank
- level : 0
- value : genpept
- level : 0
- value : gff2
- level : 0
- value : gff3
- level : 0
- value : gifasta
- level : 0
- value : hennig86
- level : 0
- value : ig
- level : 0
- value : igstrict
- level : 0
- value : jackknifer
- level : 0
- value : mase
- level : 0
- value : mega
- level : 0
- value : msf
- level : 0
- value : nbrf
- level : 0
- value : nexus
- level : 0
- value : pdb
- level : 0
- value : pdbnuc
- level : 0
- value : pdbnucseq
- level : 0
- value : pdbseq
- level : 0
- value : pearson
- level : 0
- value : phylip
- level : 0
- value : phylipnon
- level : 0
- value : raw
- level : 0
- value : refseqp
- level : 0
- value : sam
- level : 0
- value : selex
- level : 0
- value : staden
- level : 0
- value : stockholm
- level : 0
- value : strider
- level : 0
- value : swiss
- level : 0
- value : text
- level : 0
- value : treecon
- type : full
- list_item :
- list :
- base :
- data :
- result :
- extension : infoalign
- iotype : output
- base :
- data :
- ioformat : unspecified
- iotype : input
- repeatable :
- base :
- standard :
- repeatable :
- base :
- range :
- format : %f
- max : 100.0
- min : 0.0
- repeatable :
- base :
- name : plurality
- ordering : 7
- option :
- name : EDAM:0002146
- type : normal
- value : data Threshold
- name : scalemax
- type : style
- value : 100.0
- name : scalemin
- type : style
- value : 0.0
- help : Set a cut-off for the % of positive scoring matches below which there is no consensus. The default plurality is taken as 50% of the total weight of all the sequences in the alignment.
- default : 50.0
- qualifier : plurality
- mandatory : false
- prompt : Plurality check % for consensus
- type : float
- range :
- format : %f
- max : 100.0
- min : 0.0
- repeatable :
- base :
- name : identity
- ordering : 8
- option :
- name : EDAM:0002146
- type : normal
- value : data Threshold
- name : scalemax
- type : style
- value : 100.0
- name : scalemin
- type : style
- value : 0.0
- help : Provides the facility of setting the required number of identities at a position for it to give a consensus. Therefore, if this is set to 100% only columns of identities contribute to the consensus.
- default : 0.0
- qualifier : identity
- mandatory : false
- prompt : Required % of identities at a position fro consensus
- type : float
- base :
- name : html
- ordering : 12
- option :
- name : EDAM:0002135
- type : normal
- value : data Toggle
- default : false
- qualifier : html
- mandatory : false
- prompt : Format output as an HTML table
- type : boolean
- base :
- name : only
- ordering : 13
- option :
- name : EDAM:0002135
- type : normal
- value : data Toggle
- help : This is a way of shortening the command line if you only want a few things to be displayed. Instead of specifying: ‘-nohead -nousa -noname -noalign -nogaps -nogapcount -nosimcount -noidcount -nodiffcount -noweight’ to get only the sequence length output, you can specify ‘-only -seqlength’
- default : false
- qualifier : only
- mandatory : false
- prompt : Display the specified columns
- type : boolean
- base :
- name : heading
- ordering : 14
- option :
- name : EDAM:0002135
- type : normal
- value : data Toggle
- name : calculated_default
- type : normal
- value : !${only}
- default : false
- qualifier : heading
- mandatory : false
- prompt : Display column headings
- type : boolean
- base :
- name : usa
- ordering : 15
- option :
- name : EDAM:0002135
- type : normal
- value : data Toggle
- name : calculated_default
- type : normal
- value : !${only}
- default : false
- qualifier : usa
- mandatory : false
- prompt : Display the USA of the sequence
- type : boolean
- base :
- name : name
- ordering : 16
- option :
- name : EDAM:0002135
- type : normal
- value : data Toggle
- name : calculated_default
- type : normal
- value : !${only}
- default : false
- qualifier : name
- mandatory : false
- prompt : Display ‘name’ column
- type : boolean
- base :
- name : seqlength
- ordering : 17
- option :
- name : EDAM:0002135
- type : normal
- value : data Toggle
- name : calculated_default
- type : normal
- value : !${only}
- default : false
- qualifier : seqlength
- mandatory : false
- prompt : Display ‘seqlength’ column
- type : boolean
- base :
- name : alignlength
- ordering : 18
- option :
- name : EDAM:0002135
- type : normal
- value : data Toggle
- name : calculated_default
- type : normal
- value : !${only}
- default : false
- qualifier : alignlength
- mandatory : false
- prompt : Display ‘alignlength’ column
- type : boolean
- base :
- name : gaps
- ordering : 19
- option :
- name : EDAM:0002135
- type : normal
- value : data Toggle
- name : calculated_default
- type : normal
- value : !${only}
- default : false
- qualifier : gaps
- mandatory : false
- prompt : Display number of gaps
- type : boolean
- base :
- name : gapcount
- ordering : 20
- option :
- name : EDAM:0002135
- type : normal
- value : data Toggle
- name : calculated_default
- type : normal
- value : !${only}
- default : false
- qualifier : gapcount
- mandatory : false
- prompt : Display number of gap positions
- type : boolean
- base :
- name : idcount
- ordering : 21
- option :
- name : EDAM:0002135
- type : normal
- value : data Toggle
- name : calculated_default
- type : normal
- value : !${only}
- default : false
- qualifier : idcount
- mandatory : false
- prompt : Display number of identical positions
- type : boolean
- base :
- name : simcount
- ordering : 22
- option :
- name : EDAM:0002135
- type : normal
- value : data Toggle
- name : calculated_default
- type : normal
- value : !${only}
- default : false
- qualifier : simcount
- mandatory : false
- prompt : Display number of similar positions
- type : boolean
- base :
- name : diffcount
- ordering : 23
- option :
- name : EDAM:0002135
- type : normal
- value : data Toggle
- name : calculated_default
- type : normal
- value : !${only}
- default : false
- qualifier : diffcount
- mandatory : false
- prompt : Display number of different positions
- type : boolean
- base :
- name : change
- ordering : 24
- option :
- name : EDAM:0002135
- type : normal
- value : data Toggle
- name : calculated_default
- type : normal
- value : !${only}
- default : false
- qualifier : change
- mandatory : false
- prompt : Display % number of changed positions
- type : boolean
- base :
- name : weight
- ordering : 25
- option :
- name : EDAM:0002135
- type : normal
- value : data Toggle
- name : calculated_default
- type : normal
- value : !${only}
- default : false
- qualifier : weight
- mandatory : false
- prompt : Display ‘weight’ column
- type : boolean
- base :
- name : description
- ordering : 26
- option :
- name : EDAM:0002135
- type : normal
- value : data Toggle
- name : calculated_default
- type : normal
- value : !${only}
- default : false
- qualifier : description
- mandatory : false
- prompt : Display ‘description’ column
- type : boolean
- data :
- option :
- name : EDAM:0000187
- type : normal
- value : topic Sequence alignment analysis
- name : EDAM:0000257
- type : normal
- value : operation Sequence alignment description
- name : emboss
- type : normal
- value : true
- name : installation
- type : normal
- value : Soaplab2 default installation
- name : version
- type : normal
- value : 6.3.0
- app_info :
- category : alignment_multiple
- help_url : http://emboss.sourceforge.net/apps/release/6.3/emboss/apps/infoalign.html
- event :
- action :
- id : _E_1
- parameter :
- input :
- name : plurality
- default : 50.0
- mandatory : false
- type : float
- name : identity
- default : 0.0
- mandatory : false
- type : float
- name : html
- default : false
- mandatory : false
- type : boolean
- name : only
- default : false
- mandatory : false
- type : boolean
- name : heading
- default : false
- mandatory : false
- type : boolean
- name : usa
- default : false
- mandatory : false
- type : boolean
- name : name
- default : false
- mandatory : false
- type : boolean
- name : seqlength
- default : false
- mandatory : false
- type : boolean
- name : alignlength
- default : false
- mandatory : false
- type : boolean
- name : gaps
- default : false
- mandatory : false
- type : boolean
- name : gapcount
- default : false
- mandatory : false
- type : boolean
- name : idcount
- default : false
- mandatory : false
- type : boolean
- name : simcount
- default : false
- mandatory : false
- type : boolean
- name : diffcount
- default : false
- mandatory : false
- type : boolean
- name : change
- default : false
- mandatory : false
- type : boolean
- name : weight
- default : false
- mandatory : false
- type : boolean
- name : description
- default : false
- mandatory : false
- type : boolean
- analysis :
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