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About Soaplab
Soaplab services are command line applications, wrapped as SOAP services, and served from a Soaplab server. All Soaplab services have the same generic set of SOAP operations (depending on the Soaplab version) as they all share a standardised interface.
Certain tools, like the Taverna workflow workbench, provide automatic support for the Soaplab way of executing these services. In some cases you will need to use the Soaplab Server Base URL rather than the WSDL location in these tools.
More information on Soaplab clients is available here.
Further documentation on Soaplab services is available:
- Soaplab overview
- Soaplab client guide page
- EBI Soaplab server documentation
- Soaplab 2
- Sourceforge site for EMBOSS Soaplab services
Provider:
European Bioinformatics Institute (EMBL-EBI)
Location:
UNITED KINGDOM
Submitter/Source:
Mike Mayer (over 9 years ago)
Base URL:
http://www.ebi.ac.uk/soaplab/services/nucleic_profiles.prophet
WSDL Location:
http://www.ebi.ac.uk/soaplab/services/nucleic_profiles.prophet?wsdl(download last cached WSDL file)
Documentation URL(s): None Login to add a documentation URL Description(s): No description(s) yet Login to add a description ELIXIR Description(s): No info yet Login to add an elixir description Details (from Soaplab server): from Soaplab server(over 8 years ago)
- ds_lsr_analysis :
- analysis :
- name : prophet
- output :
- installation : Soaplab2 default installation
- version : 6.3.0
- type : Nucleic Profiles, Protein Profiles
- description : Scan one or more sequences with a Gribskov or Henikoff profile
- analysis_extension :
- input :
- analysis :
- ds_lsr_analysis :
- analysis :
- name : prophet
- output :
- installation : Soaplab2 default installation
- version : 6.3.0
- type : Nucleic Profiles, Protein Profiles
- description : Scan one or more sequences with a Gribskov or Henikoff profile
- analysis_extension :
- parameter :
- data :
- list :
- list_item :
- level : 0
- value : abi
- level : 0
- value : ace
- level : 0
- value : acedb
- level : 0
- value : bam
- level : 0
- value : biomart
- level : 0
- value : clustal
- level : 0
- value : codata
- level : 0
- value : dbid
- level : 0
- value : embl
- level : 0
- value : ensembl
- level : 0
- value : experiment
- level : 0
- value : fasta
- level : 0
- value : fastq
- level : 0
- value : fastq-illumina
- level : 0
- value : fastq-sanger
- level : 0
- value : fastq-solexa
- level : 0
- value : fitch
- level : 0
- value : gcg
- level : 0
- value : genbank
- level : 0
- value : genpept
- level : 0
- value : gff2
- level : 0
- value : gff3
- level : 0
- value : gifasta
- level : 0
- value : hennig86
- level : 0
- value : ig
- level : 0
- value : igstrict
- level : 0
- value : jackknifer
- level : 0
- value : mase
- level : 0
- value : mega
- level : 0
- value : msf
- level : 0
- value : nbrf
- level : 0
- value : nexus
- level : 0
- value : pdb
- level : 0
- value : pdbnuc
- level : 0
- value : pdbnucseq
- level : 0
- value : pdbseq
- level : 0
- value : pearson
- level : 0
- value : phylip
- level : 0
- value : phylipnon
- level : 0
- value : raw
- level : 0
- value : refseqp
- level : 0
- value : sam
- level : 0
- value : selex
- level : 0
- value : staden
- level : 0
- value : stockholm
- level : 0
- value : strider
- level : 0
- value : swiss
- level : 0
- value : text
- level : 0
- value : treecon
- type : full
- list_item :
- list :
- base :
- data :
- ioformat : unspecified
- iotype : input
- repeatable :
- base :
- range :
- format : %f
- max : 100.0
- min : 0.0
- repeatable :
- base :
- name : gapopen
- ordering : 5
- option :
- name : EDAM:0001397
- type : normal
- value : data Gap opening penalty
- name : scalemax
- type : style
- value : 100.0
- name : scalemin
- type : style
- value : 0.0
- default : 1.0
- qualifier : gapopen
- mandatory : false
- prompt : Gap opening coefficient
- type : float
- range :
- format : %f
- max : 100.0
- min : 0.0
- repeatable :
- base :
- name : gapextend
- ordering : 6
- option :
- name : EDAM:0001398
- type : normal
- value : data Gap extension penalty
- name : scalemax
- type : style
- value : 100.0
- name : scalemin
- type : style
- value : 0.0
- default : 1.0
- qualifier : gapextend
- mandatory : false
- prompt : Gap extension coefficient
- type : float
- data :
- result :
- iotype : output
- base :
- data :
- option :
- name : EDAM:0000188
- type : normal
- value : topic Sequence profiles
- name : EDAM:0000300
- type : normal
- value : operation Sequence-profile alignment
- name : emboss
- type : normal
- value : true
- name : installation
- type : normal
- value : Soaplab2 default installation
- name : version
- type : normal
- value : 6.3.0
- app_info :
- category : nucleic_profiles
- help_url : http://emboss.sourceforge.net/apps/release/6.3/emboss/apps/prophet.html
- event :
- action :
- id : _E_1
- parameter :
- input :
- name : gapopen
- default : 1.0
- mandatory : false
- type : float
- name : gapextend
- default : 1.0
- mandatory : false
- type : float
- analysis :
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