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- Soaplab overview
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Provider:
European Bioinformatics Institute (EMBL-EBI)
Location:
UNITED KINGDOM
Submitter/Source:
Mike Mayer (over 9 years ago)
Base URL:
http://www.ebi.ac.uk/soaplab/services/phylogeny_molecular_sequence.frestboot
WSDL Location:
http://www.ebi.ac.uk/soaplab/services/phylogeny_molecular_sequence.frestboot?wsdl(download last cached WSDL file)
Documentation URL(s): None Login to add a documentation URL Description(s): No description(s) yet Login to add a description ELIXIR Description(s): No info yet Login to add an elixir description Details (from Soaplab server): from Soaplab server(over 8 years ago)
- ds_lsr_analysis :
- analysis :
- name : frestboot
- output :
- installation : Soaplab2 default installation
- version : 6.3.0
- type : Phylogeny Molecular sequence
- description : Bootstrapped restriction sites algorithm
- analysis_extension :
- input :
- analysis :
- ds_lsr_analysis :
- analysis :
- name : frestboot
- output :
- installation : Soaplab2 default installation
- version : 6.3.0
- type : Phylogeny Molecular sequence
- description : Bootstrapped restriction sites algorithm
- analysis_extension :
- parameter :
- data :
- ioformat : unspecified
- iotype : input
- repeatable :
- base :
- data :
- result :
- iotype : output
- base :
- data :
- ioformat : unspecified
- iotype : input
- repeatable :
- base :
- standard :
- list :
- list_item :
- shown_as : Bootstrap
- level : 0
- value : b
- shown_as : Jackknife
- level : 0
- value : j
- shown_as : Permute species for each character
- level : 0
- value : c
- shown_as : Permute character order
- level : 0
- value : o
- shown_as : Permute within species
- level : 0
- value : s
- shown_as : Rewrite data
- level : 0
- value : r
- name : Test
- type : full
- list_item :
- repeatable :
- list :
- base :
- base :
- name : regular
- ordering : 7
- option :
- name : EDAM:
- type : normal
- value : Generic boolean
- default : false
- qualifier : regular
- mandatory : false
- prompt : Altered sampling fraction
- type : boolean
- range :
- format : %f
- max : 100.0
- min : 0.1
- repeatable :
- base :
- name : fracsample
- ordering : 8
- option :
- name : EDAM:
- type : normal
- value : Generic float
- name : scalemax
- type : style
- value : 100.0
- name : scalemin
- type : style
- value : 0.1
- default : 100.0
- qualifier : fracsample
- mandatory : false
- prompt : Samples as percentage of sites
- type : float
- standard :
- list :
- list_item :
- shown_as : PHYLIP
- level : 0
- value : p
- shown_as : NEXUS
- level : 0
- value : n
- shown_as : XML
- level : 0
- value : x
- name : test
- type : full
- list_item :
- repeatable :
- list :
- base :
- range :
- format : %d
- min : 1
- repeatable :
- base :
- name : blocksize
- ordering : 10
- option :
- name : EDAM:
- type : normal
- value : Generic integer
- name : scalemin
- type : style
- value : 1
- default : 1
- qualifier : blocksize
- mandatory : false
- prompt : Block size for bootstraping
- type : long
- range :
- format : %d
- min : 1
- repeatable :
- base :
- name : reps
- ordering : 11
- option :
- name : EDAM:
- type : normal
- value : Generic integer
- name : scalemin
- type : style
- value : 1
- default : 100
- qualifier : reps
- mandatory : false
- prompt : How many replicates
- type : long
- standard :
- list :
- list_item :
- shown_as : Datasets
- level : 0
- value : d
- shown_as : Weights
- level : 0
- value : w
- name : Write out datasets or just weights
- type : full
- list_item :
- repeatable :
- list :
- base :
- base :
- name : enzymes
- ordering : 13
- option :
- name : EDAM:
- type : normal
- value : Generic boolean
- default : false
- qualifier : enzymes
- mandatory : false
- prompt : Is the number of enzymes present in input file
- type : boolean
- range :
- format : %d
- max : 32767
- min : 1
- repeatable :
- base :
- name : seed
- ordering : 14
- option :
- name : EDAM:
- type : normal
- value : Generic integer
- name : scalemax
- type : style
- value : 32767
- name : scalemin
- type : style
- value : 1
- default : 1
- qualifier : seed
- mandatory : false
- prompt : Random number seed between 1 and 32767 (must be odd)
- type : long
- base :
- name : printdata
- ordering : 18
- option :
- name : EDAM:
- type : normal
- value : Generic boolean
- default : false
- qualifier : printdata
- mandatory : false
- prompt : Print out the data at start of run
- type : boolean
- base :
- name : dotdiff
- ordering : 19
- option :
- name : EDAM:
- type : normal
- value : Generic boolean
- default : false
- qualifier : dotdiff
- mandatory : false
- prompt : Use dot-differencing
- type : boolean
- base :
- name : progress
- ordering : 20
- option :
- name : EDAM:
- type : normal
- value : Generic boolean
- default : false
- qualifier : progress
- mandatory : false
- prompt : Print indications of progress of run
- type : boolean
- data :
- option :
- name : emboss
- type : normal
- value : true
- name : installation
- type : normal
- value : Soaplab2 default installation
- name : version
- type : normal
- value : 6.3.0
- app_info :
- category : phylogeny_molecular_sequence
- help_url : http://emboss.sourceforge.net/apps/release/6.3/emboss/apps/frestboot.html
- event :
- action :
- id : _E_1
- parameter :
- input :
- name : regular
- default : false
- mandatory : false
- type : boolean
- name : fracsample
- default : 100.0
- mandatory : false
- type : float
- name : blocksize
- default : 1
- mandatory : false
- type : long
- name : reps
- default : 100
- mandatory : false
- type : long
- name : enzymes
- default : false
- mandatory : false
- type : boolean
- name : seed
- default : 1
- mandatory : false
- type : long
- name : printdata
- default : false
- mandatory : false
- type : boolean
- name : dotdiff
- default : false
- mandatory : false
- type : boolean
- name : progress
- default : false
- mandatory : false
- type : boolean
- analysis :
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