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- Soaplab overview
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Provider:
European Bioinformatics Institute (EMBL-EBI)
Location:
UNITED KINGDOM
Submitter/Source:
Mike Mayer (over 9 years ago)
Base URL:
http://www.ebi.ac.uk/soaplab/services/protein_motifs.patmatmotifs
WSDL Location:
http://www.ebi.ac.uk/soaplab/services/protein_motifs.patmatmotifs?wsdl(download last cached WSDL file)
Documentation URL(s): None Login to add a documentation URL Description(s): No description(s) yet Login to add a description ELIXIR Description(s): No info yet Login to add an elixir description Details (from Soaplab server): from Soaplab server(over 8 years ago)
- ds_lsr_analysis :
- analysis :
- name : patmatmotifs
- output :
- installation : Soaplab2 default installation
- version : 6.3.0
- type : Protein Motifs
- description : Scan a protein sequence with motifs from the PROSITE database
- analysis_extension :
- input :
- analysis :
- ds_lsr_analysis :
- analysis :
- name : patmatmotifs
- output :
- installation : Soaplab2 default installation
- version : 6.3.0
- type : Protein Motifs
- description : Scan a protein sequence with motifs from the PROSITE database
- analysis_extension :
- parameter :
- data :
- list :
- list_item :
- level : 0
- value : abi
- level : 0
- value : ace
- level : 0
- value : acedb
- level : 0
- value : bam
- level : 0
- value : biomart
- level : 0
- value : clustal
- level : 0
- value : codata
- level : 0
- value : dbid
- level : 0
- value : embl
- level : 0
- value : ensembl
- level : 0
- value : experiment
- level : 0
- value : fasta
- level : 0
- value : fastq
- level : 0
- value : fastq-illumina
- level : 0
- value : fastq-sanger
- level : 0
- value : fastq-solexa
- level : 0
- value : fitch
- level : 0
- value : gcg
- level : 0
- value : genbank
- level : 0
- value : genpept
- level : 0
- value : gff2
- level : 0
- value : gff3
- level : 0
- value : gifasta
- level : 0
- value : hennig86
- level : 0
- value : ig
- level : 0
- value : igstrict
- level : 0
- value : jackknifer
- level : 0
- value : mase
- level : 0
- value : mega
- level : 0
- value : msf
- level : 0
- value : nbrf
- level : 0
- value : nexus
- level : 0
- value : pdb
- level : 0
- value : pdbnuc
- level : 0
- value : pdbnucseq
- level : 0
- value : pdbseq
- level : 0
- value : pearson
- level : 0
- value : phylip
- level : 0
- value : phylipnon
- level : 0
- value : raw
- level : 0
- value : refseqp
- level : 0
- value : sam
- level : 0
- value : selex
- level : 0
- value : staden
- level : 0
- value : stockholm
- level : 0
- value : strider
- level : 0
- value : swiss
- level : 0
- value : text
- level : 0
- value : treecon
- type : full
- list_item :
- list :
- base :
- data :
- result :
- iotype : output
- base :
- base :
- name : full
- ordering : 4
- option :
- name : EDAM:0002135
- type : normal
- value : data Toggle
- default : false
- qualifier : full
- mandatory : false
- prompt : Provide full documentation for matching patterns
- type : boolean
- base :
- name : prune
- ordering : 5
- option :
- name : EDAM:0002135
- type : normal
- value : data Toggle
- help : Ignore simple patterns. If this is true then these simple post-translational modification sites are not reported: myristyl, asn_glycosylation, camp_phospho_site, pkc_phospho_site, ck2_phospho_site, and tyr_phospho_site.
- default : false
- qualifier : prune
- mandatory : false
- prompt : Ignore simple patterns
- type : boolean
- data :
- option :
- name : EDAM:0000161
- type : normal
- value : topic Protein sequence motifs
- name : EDAM:0000340
- type : normal
- value : operation Protein secondary database search
- name : EDAM:0000382
- type : normal
- value : operation Protein sequence motif searching
- name : emboss
- type : normal
- value : true
- name : installation
- type : normal
- value : Soaplab2 default installation
- name : version
- type : normal
- value : 6.3.0
- app_info :
- category : protein_motifs
- help_url : http://emboss.sourceforge.net/apps/release/6.3/emboss/apps/patmatmotifs.html
- event :
- action :
- id : _E_1
- parameter :
- input :
- name : full
- default : false
- mandatory : false
- type : boolean
- name : prune
- default : false
- mandatory : false
- type : boolean
- analysis :
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