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Provider:
European Bioinformatics Institute (EMBL-EBI)
Location:
UNITED KINGDOM
Submitter/Source:
Mike Mayer (over 9 years ago)
Base URL:
http://www.ebi.ac.uk/soaplab/services/protein_motifs.oddcomp
WSDL Location:
http://www.ebi.ac.uk/soaplab/services/protein_motifs.oddcomp?wsdl(download last cached WSDL file)
Documentation URL(s): None Login to add a documentation URL Description(s): No description(s) yet Login to add a description ELIXIR Description(s): No info yet Login to add an elixir description Details (from Soaplab server): from Soaplab server(about 8 years ago)
- ds_lsr_analysis :
- analysis :
- name : oddcomp
- output :
- installation : Soaplab2 default installation
- version : 6.3.0
- type : Protein Motifs
- description : Identify proteins with specified sequence word composition
- analysis_extension :
- input :
- analysis :
- ds_lsr_analysis :
- analysis :
- name : oddcomp
- output :
- installation : Soaplab2 default installation
- version : 6.3.0
- type : Protein Motifs
- description : Identify proteins with specified sequence word composition
- analysis_extension :
- parameter :
- data :
- list :
- list_item :
- level : 0
- value : abi
- level : 0
- value : ace
- level : 0
- value : acedb
- level : 0
- value : bam
- level : 0
- value : biomart
- level : 0
- value : clustal
- level : 0
- value : codata
- level : 0
- value : dbid
- level : 0
- value : embl
- level : 0
- value : ensembl
- level : 0
- value : experiment
- level : 0
- value : fasta
- level : 0
- value : fastq
- level : 0
- value : fastq-illumina
- level : 0
- value : fastq-sanger
- level : 0
- value : fastq-solexa
- level : 0
- value : fitch
- level : 0
- value : gcg
- level : 0
- value : genbank
- level : 0
- value : genpept
- level : 0
- value : gff2
- level : 0
- value : gff3
- level : 0
- value : gifasta
- level : 0
- value : hennig86
- level : 0
- value : ig
- level : 0
- value : igstrict
- level : 0
- value : jackknifer
- level : 0
- value : mase
- level : 0
- value : mega
- level : 0
- value : msf
- level : 0
- value : nbrf
- level : 0
- value : nexus
- level : 0
- value : pdb
- level : 0
- value : pdbnuc
- level : 0
- value : pdbnucseq
- level : 0
- value : pdbseq
- level : 0
- value : pearson
- level : 0
- value : phylip
- level : 0
- value : phylipnon
- level : 0
- value : raw
- level : 0
- value : refseqp
- level : 0
- value : sam
- level : 0
- value : selex
- level : 0
- value : staden
- level : 0
- value : stockholm
- level : 0
- value : strider
- level : 0
- value : swiss
- level : 0
- value : text
- level : 0
- value : treecon
- type : full
- list_item :
- list :
- base :
- data :
- ioformat : unspecified
- iotype : input
- repeatable :
- base :
- data :
- result :
- extension : oddcomp
- iotype : output
- base :
- base :
- name : fullwindow
- ordering : 5
- option :
- name : EDAM:0002135
- type : normal
- value : data Toggle
- help : Set this option on (Y) if you want the window size to be set to the length of the current protein. Otherwise, leave this option unset, in which case you’ll be prompted for a window size to use.
- default : false
- qualifier : fullwindow
- mandatory : false
- prompt : Set window size to length of current protein
- type : boolean
- range :
- format : %d
- min : 10
- repeatable :
- base :
- name : window
- ordering : 6
- option :
- name : EDAM:0001251
- type : normal
- value : data Window size
- name : scalemin
- type : style
- value : 10
- help : This is the size of window in which to count. Thus if you want to count frequencies in a 40 aa stretch you should enter 40 here.
- default : 30
- qualifier : window
- mandatory : false
- prompt : Window size to consider (e.g. 30 aa)
- type : long
- base :
- name : ignorebz
- ordering : 9
- option :
- name : EDAM:0002135
- type : normal
- value : data Toggle
- help : The amino acid code B represents Asparagine or Aspartic acid and the code Z represents Glutamine or Glutamic acid. These are not commonly used codes and you may wish not to count words containing them, just noting them in the count of ‘Other’ words.
- default : false
- qualifier : ignorebz
- mandatory : false
- prompt : Ignore the amino acids B and Z and just count them as ‘Other’
- type : boolean
- data :
- option :
- name : EDAM:0000157
- type : normal
- value : topic Sequence composition
- name : EDAM:0000378
- type : normal
- value : operation Amino acid composition analysis
- name : emboss
- type : normal
- value : true
- name : installation
- type : normal
- value : Soaplab2 default installation
- name : version
- type : normal
- value : 6.3.0
- app_info :
- category : protein_motifs
- help_url : http://emboss.sourceforge.net/apps/release/6.3/emboss/apps/oddcomp.html
- event :
- action :
- id : _E_1
- parameter :
- input :
- name : fullwindow
- default : false
- mandatory : false
- type : boolean
- name : window
- default : 30
- mandatory : false
- type : long
- name : ignorebz
- default : false
- mandatory : false
- type : boolean
- analysis :
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