scopparse SOAP Soaplab

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Provider:
European Bioinformatics Institute (EBI)

Location:
UNITED KINGDOM

Submitter / Source:
Mike Mayer (5 months ago)

Base URL:
http://www.ebi.ac.uk/soaplab/services/utils_database_creation.scopparse

WSDL Location:
http://www.ebi.ac.uk/soaplab/services/utils_database_creation.scopparse?wsdl(download last cached WSDL file)

Documentation URL(s): None Login to add a documentation URL Description(s): No description(s) yet Login to add a description Details (from Soaplab server): from Soaplab server(5 months ago)

  • ds_lsr_analysis :
    • analysis :
      • name : scopparse
      • output :
      • type : Utils Database creation
      • version : 6.1.0
      • installation : Soaplab2 default installation
      • description : Generate DCF file from raw SCOP files.
      • input :
      • analysis_extension :

Show all

  • ds_lsr_analysis :
    • analysis :
      • name : scopparse
      • output :
      • type : Utils Database creation
      • version : 6.1.0
      • installation : Soaplab2 default installation
      • description : Generate DCF file from raw SCOP files.
      • input :
        • name : nosegments
        • default : false
        • mandatory : false
        • type : boolean
        • name : nomultichain
        • default : false
        • mandatory : false
        • type : boolean
        • name : nominor
        • default : false
        • mandatory : false
        • type : boolean
      • analysis_extension :
        • parameter :
          • data :
            • ioformat : unspecified
            • iotype : input
            • repeatable :
          • base :
          • data :
            • ioformat : unspecified
            • iotype : input
            • repeatable :
          • base :
          • base :
            • ordering : 5
            • name : nosegments
            • help : This option specifies whether to omit domains comprising of more than one segment. This is necessary if a continuous residue sequence is required.
            • qualifier : nosegments
            • default : false
            • mandatory : false
            • type : boolean
            • prompt : Omit domains comprising of more than one segment.
          • base :
            • ordering : 6
            • name : nomultichain
            • help : This option specifies whether to omit domains comprising segments from more than one chain. This is necessary if a continuous residue sequence is required.
            • qualifier : nomultichain
            • default : false
            • mandatory : false
            • type : boolean
            • prompt : Omit domains comprising segments from more than one chain.
          • data :
            • result :
            • iotype : output
          • base :
          • base :
            • ordering : 8
            • name : nominor
            • help : This option specifies whether to omit domains from minor classes (defined as anything not in class ‘All alpha proteins’, ‘All beta proteins’, ‘Alpha and beta proteins (a/b)’ or ‘Alpha and beta proteins (a+b)’). This is necessary or appropriate for many analyses.
            • qualifier : nominor
            • default : false
            • mandatory : false
            • type : boolean
            • prompt : Omit domains from minor classes. This is defined as anything not in class ‘All alpha proteins’, ‘All beta proteins’, ‘Alpha and beta proteins (a/b)’ or ‘Alpha and beta proteins (a+b)’.
        • option :
          • name : emboss
          • value : true
          • type : normal
          • name : installation
          • value : Soaplab2 default installation
          • type : normal
          • name : version
          • value : 6.1.0
          • type : normal
        • app_info :
          • category : utils_database_creation
          • help_url : http://emboss.sourceforge.net/apps/release/6.1/emboss/apps/scopparse.html
        • event :
          • action :
          • id : _E_1

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