Services - PRANK (SOAP) (SOAP) [Provided by: European Bioinformatics Institute (EMBL-EBI)]

Provider:
European Bioinformatics Institute (EBI)

Location:
UNITED KINGDOM

Submitter / Source:
Hamish McWilliam (11 months ago)

Base URL:
http://www.ebi.ac.uk/Tools/services/soap/prank

WSDL Location:
http://www.ebi.ac.uk/Tools/services/soap/prank?wsdl(download last cached WSDL file)

Documentation URL(s): Hamish McWilliam (11 months ago)http://www.ebi.ac.uk/Tools/webservices/services/msa/prank_soap

Login to add a documentation URL Description(s): Hamish McWilliam (11 months ago)This is the document/literal SOAP version of the service, for the REST version of the service see https://www.biocatalogue.org/services/2746.

Hamish McWilliam (11 months ago)PRANK is a probabilistic multiple alignment program for DNA, codon and amino-acid sequences. It’s based on a novel algorithm that treats insertions correctly and avoids over-estimation of the number of deletion events. In addition, PRANK borrows ideas from maximum likelihood methods used in phylogenetics and correctly takes into account the evolutionary distances between sequences. Lastly, PRANK allows for defining a potential structure for sequences to be aligned and then, simultaneously with the alignment, predicts the locations of structural units in the sequences.

Login to add a description License(s): Hamish McWilliam (11 months ago)EMBL-EBI Terms of Use: http://www.ebi.ac.uk/Information/termsofuse.html

Login to add cost info Usage Conditions: Hamish McWilliam (11 months ago)E-mail supplied for submission must be a valid e-mail address and no more than 25 concurrent jobs should be submitted at any one time, see http://www.ebi.ac.uk/Tools/webservices/about/webservices and the EMBL-EBI Terms of Use: http://www.ebi.ac.uk/Information/termsofuse.html.

Login to add usage conditions info Contact Info: Hamish McWilliam (11 months ago)EBI support team: http://www.ebi.ac.uk/support/index.php?query=WebServices

Login to add contact info Publications: for this service. This can be a URI to the publication and/or a DOI. Hamish McWilliam (2 days ago)Goujon M., McWilliam H., Li W., Valentin F., Squizzato S., Paern J. and Lopez R. (2010)
“A new bioinformatics analysis tools framework at EMBL-EBI.”
Nucleic Acids Res. 38:W695-9
PMID: 20439314 (http://www.ebi.ac.uk/citexplore/citationDetails.do?externalId=20439314&dataSource;=MED)
DOI: 10.1093/nar/gkq313 (http://dx.doi.org/10.1093/nar/gkq313)

Hamish McWilliam (2 days ago)Löytynoja A. and Goldman N. (2005).
“An algorithm for progressive multiple alignment of sequences with insertions.”
PNAS 102:10557-10562.
PMID: 16000407 (http://www.ebi.ac.uk/citexplore/citationDetails.do?externalId=16000407&dataSource;=MED)
DOI: 10.1073/pnas.0409137102 (http://dx.doi.org/10.1073/pnas.0409137102)