InterProScan SOAP

Provider:
GenOuest

Location:
FRANCE

Submitter / Source:
olivier.sallou (10 months ago)

Base URL:
http://webservices.genouest.org/opal2/services/InterProScan

WSDL Location:
http://webservices.genouest.org/typedservices/InterProScan.wsdl(download last cached WSDL file)

Documentation URL(s): olivier.sallou (10 months ago)http://www.ebi.ac.uk/Tools/InterProScan/help.html

Login to add a documentation URL Description(s): olivier.sallou (10 months ago)InterProScan

usage: iprscan [-appl …] [-nocrc] [-seqtype p|n] [-trlen ] [-trtable

] [-iprlookup] [-goterms] -i [-o ]-i Your sequence file (mandatory).
-o

The output file where to write results
-appl Application(s) to run (optional, use ‘+’ as separator for multiple applications), default is all.
Possible values (dependent on set-up):
blastprodom
fprintscan
hamap
hmmpfam
hmmpir
hmmpanther
hmmtigr
hmmsmart
superfamily
gene3d
patternscan
profilescan
seg
coils
-nocrc Don’t perform CRC64 check, default is on.
-seqtype Sequence type: n for DNA/RNA, p for protein (default).
-trlen Transcript length threshold (20-150).
-trtable

Codon table number. -goterms Show GO terms if iprlookup option is also given. -iprlookup Switch on the InterPro lookup for results. -formatOutput results format (raw, txt, html, xml(default), ebixml(EBI header on top of xml), gff)
-verbose Print messages during run

Login to add a descriptionLicense(s): None Login to add license infoCost: No info yet Login to add cost infoUsage Conditions: No info yet Login to add usage conditions infoContact Info:olivier.sallou (9 months ago)support[at]genouest.orgLogin to add contact infoPublications: for this service. This can be a URI to the publication and/or a DOI. None Login to add publication infoCitations: None Login to add a citation