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About Soaplab
Soaplab services are command line applications, wrapped as SOAP services, and served from a Soaplab server. All Soaplab services have the same generic set of SOAP operations (depending on the Soaplab version) as they all share a standardised interface.
Certain tools, like the Taverna workflow workbench, provide automatic support for the Soaplab way of executing these services. In some cases you will need to use the Soaplab Server Base URL rather than the WSDL location in these tools.
More information on Soaplab clients is available here.
Further documentation on Soaplab services is available:
- Soaplab overview
- Soaplab client guide page
- EBI Soaplab server documentation
- Soaplab 2
- Sourceforge site for EMBOSS Soaplab services
Provider:
European Bioinformatics Institute (EBI)
Location:
United Kingdom
Submitter / Source:
SoapLab Support (over 3 years ago)
Base URL:
http://www.ebi.ac.uk:80/soaplab/typed/services/protein_composition.emowse
WSDL Location:
http://www.ebi.ac.uk/soaplab/typed/services/protein_composition.emowse?wsdl(download last cached WSDL file)
Documentation URL(s): SoapLab Support (over 2 years ago)http://emboss.sourceforge.net/apps/release/6.0/emboss/apps/emowse.html
Login to add a documentation URL Description(s): from provider’s description doc (about 1 year ago) Search protein sequences by digest fragment molecular weight
SoapLab Support (over 2 years ago)Search protein sequences by digest fragment molecular weight
Login to add a description Details (from Soaplab server): from Soaplab server(about 1 year ago)
- ds_lsr_analysis :
- analysis :
- name : emowse
- output :
- version : 6.1.0
- type : Protein Composition
- installation : Soaplab2 default installation
- description : Search protein sequences by digest fragment molecular weight
- input :
- analysis_extension :
- analysis :
- ds_lsr_analysis :
- analysis :
- name : emowse
- output :
- version : 6.1.0
- type : Protein Composition
- installation : Soaplab2 default installation
- description : Search protein sequences by digest fragment molecular weight
- input :
- name : weight
- default : 0
- mandatory : false
- type : long
- name : mono
- default : false
- mandatory : false
- type : boolean
- name : pcrange
- default : 25
- mandatory : false
- type : long
- name : tolerance
- default : 0.1
- mandatory : false
- type : float
- name : partials
- default : 0.4
- mandatory : false
- type : float
- analysis_extension :
- parameter :
- data :
- list :
- list_item :
- level : 0
- value : gcg
- level : 0
- value : gcg8
- level : 0
- value : embl
- level : 0
- value : swiss
- level : 0
- value : fasta
- level : 0
- value : ncbi
- level : 0
- value : genbank
- level : 0
- value : nbrf
- level : 0
- value : pir
- level : 0
- value : codata
- level : 0
- value : strider
- level : 0
- value : clustal
- level : 0
- value : phylip
- level : 0
- value : acedb
- level : 0
- value : msf
- level : 0
- value : jackknifer
- level : 0
- value : jackknifernon
- level : 0
- value : nexus
- level : 0
- value : nexusnon
- level : 0
- value : treecon
- level : 0
- value : mega
- level : 0
- value : meganon
- level : 0
- value : ig
- level : 0
- value : staden
- level : 0
- value : text
- level : 0
- value : raw
- type : full
- list_item :
- list :
- base :
- data :
- ioformat : unspecified
- iotype : input
- repeatable :
- base :
- range :
- format : %d
- repeatable :
- base :
- ordering : 8
- name : weight
- qualifier : weight
- default : 0
- mandatory : false
- type : long
- prompt : Whole sequence molwt
- base :
- ordering : 9
- name : mono
- qualifier : mono
- default : false
- mandatory : false
- type : boolean
- prompt : Use monoisotopic weights
- data :
- result :
- iotype : output
- base :
- data :
- ioformat : unspecified
- iotype : input
- repeatable :
- base :
- data :
- ioformat : unspecified
- iotype : input
- repeatable :
- base :
- standard :
- list :
- list_item :
- shown_as : Trypsin
- level : 0
- value : 1
- shown_as : Lys-C
- level : 0
- value : 2
- shown_as : Arg-C
- level : 0
- value : 3
- shown_as : Asp-N
- level : 0
- value : 4
- shown_as : V8-bicarb
- level : 0
- value : 5
- shown_as : V8-phosph
- level : 0
- value : 6
- shown_as : Chymotrypsin
- level : 0
- value : 7
- shown_as : CNBr
- level : 0
- value : 8
- name : Enzymes and reagents
- type : full
- list_item :
- repeatable :
- list :
- base :
- range :
- format : %d
- max : 75
- min : 0
- repeatable :
- base :
- ordering : 12
- name : pcrange
- option :
- name : scalemax
- value : 75
- type : style
- qualifier : pcrange
- default : 25
- mandatory : false
- type : long
- prompt : Allowed whole sequence weight variability
- range :
- format : %f
- max : 1.0
- min : 0.1
- repeatable :
- base :
- ordering : 13
- name : tolerance
- option :
- name : scalemax
- value : 1.0
- type : style
- name : scalemin
- value : 0.1
- type : style
- qualifier : tolerance
- default : 0.1
- mandatory : false
- type : float
- prompt : Tolerance
- range :
- format : %f
- max : 1.0
- min : 0.1
- repeatable :
- base :
- ordering : 14
- name : partials
- option :
- name : scalemax
- value : 1.0
- type : style
- name : scalemin
- value : 0.1
- type : style
- qualifier : partials
- default : 0.4
- mandatory : false
- type : float
- prompt : Partials factor
- data :
- option :
- name : emboss
- value : true
- type : normal
- name : installation
- value : Soaplab2 default installation
- type : normal
- name : version
- value : 6.1.0
- type : normal
- app_info :
- category : protein_composition
- help_url : http://emboss.sourceforge.net/apps/release/6.1/emboss/apps/emowse.html
- event :
- action :
- id : _E_1
- parameter :
- analysis :
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