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About Soaplab
Soaplab services are command line applications, wrapped as SOAP services, and served from a Soaplab server. All Soaplab services have the same generic set of SOAP operations (depending on the Soaplab version) as they all share a standardised interface.
Certain tools, like the Taverna workflow workbench, provide automatic support for the Soaplab way of executing these services. In some cases you will need to use the Soaplab Server Base URL rather than the WSDL location in these tools.
More information on Soaplab clients is available here.
Further documentation on Soaplab services is available:
- Soaplab overview
- Soaplab client guide page
- EBI Soaplab server documentation
- Soaplab 2
- Sourceforge site for EMBOSS Soaplab services
Provider:
European Bioinformatics Institute (EBI)
Location:
United Kingdom
Submitter / Source:
uludag (about 1 year ago)
Base URL:
http://www.ebi.ac.uk:80/soaplab/typed/services/protein_2d_structure.tmap
WSDL Location:
http://www.ebi.ac.uk/soaplab/typed/services/protein_2d_structure.tmap?wsdl(download last cached WSDL file)
Soaplab Server Base URL:
http://www.ebi.ac.uk:80/soaplab/typed/services
Soaplab Server WSDL:
http://www.ebi.ac.uk/soaplab/typed/services/list?wsdl
Documentation URL(s): uludag (9 months ago)http://emboss.sourceforge.net/apps/release/6.0/emboss/apps/tmap.html
Login to add a documentation URL Description(s): from provider’s description doc (6 months ago) Predict and plot transmembrane segments in protein sequences
uludag (9 months ago)Predict and plot transmembrane segments in protein sequences
Login to add a description Details (from Soaplab server): from Soaplab server(6 months ago)
- ds_lsr_analysis :
- analysis :
- name : tmap
- type : Protein 2D Structure
- installation : Soaplab2 default installation
- output :
- version : 6.1.0
- description : Predict and plot transmembrane segments in protein sequences
- input :
- analysis_extension :
- analysis :
- ds_lsr_analysis :
- analysis :
- name : tmap
- type : Protein 2D Structure
- installation : Soaplab2 default installation
- output :
- version : 6.1.0
- description : Predict and plot transmembrane segments in protein sequences
- input :
- analysis_extension :
- option :
- name : emboss
- type : normal
- value : true
- name : installation
- type : normal
- value : Soaplab2 default installation
- name : version
- type : normal
- value : 6.1.0
- event :
- action :
- id : _E_1
- app_info :
- category : protein_2d_structure
- help_url : http://emboss.sourceforge.net/apps/release/6.1/emboss/apps/tmap.html
- parameter :
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- value : gcg8
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- value : ncbi
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- value : pir
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- value : codata
- level : 0
- value : strider
- level : 0
- value : clustal
- level : 0
- value : phylip
- level : 0
- value : acedb
- level : 0
- value : msf
- level : 0
- value : jackknifer
- level : 0
- value : jackknifernon
- level : 0
- value : nexus
- level : 0
- value : nexusnon
- level : 0
- value : treecon
- level : 0
- value : mega
- level : 0
- value : meganon
- level : 0
- value : ig
- level : 0
- value : staden
- level : 0
- value : text
- level : 0
- value : raw
- type : full
- list_item :
- list :
- standard :
- list :
- list_item :
- shown_as : Portable Network Graphics (png)
- level : 0
- value : png
- shown_as : Postscript
- level : 0
- value : colourps
- type : full
- list_item :
- repeatable :
- list :
- base :
- base :
- data :
- result :
- iotype : output
- base :
- data :
- result :
- iotype : output
- base :
- name : Graphics_in_PNG
- qualifier : Graphics_in_PNG
- mandatory : false
- option :
- name : allow_non_existent
- type : normal
- value : true
- name : datatype
- type : normal
- value : bindata
- name : mimetype
- type : normal
- value : image/png
- name : nodisplay
- type : style
- value : true
- type : byte[][]
- method : %%%Graphics_in_PNG%%% ${Graphics_in_PNG}
- ordering : 4
- data :
- result :
- iotype : output
- option :
- analysis :
License(s): None Login to add license info Cost: No info yet Login to add cost info Usage Conditions: No info yet Login to add usage conditions info Contact Info: None Login to add contact info Publications: for this service. This can be a URI to the publication and/or a DOI. None Login to add publication info Citations: None Login to add a citation