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Provider:
European Bioinformatics Institute (EBI)
Location:
United Kingdom
Submitter / Source:
uludag (over 2 years ago)
Base URL:
http://www.ebi.ac.uk:80/soaplab/typed/services/protein_2d_structure.helixturnhelix
WSDL Location:
http://www.ebi.ac.uk/soaplab/typed/services/protein_2d_structure.helixturnhelix?wsdl(download last cached WSDL file)
Documentation URL(s): uludag (about 1 year ago)http://emboss.sourceforge.net/apps/release/6.0/emboss/apps/helixturnhelix.html
Login to add a documentation URL Description(s): from provider’s description doc (10 months ago) Identify nucleic acid-binding motifs in protein sequences
Franck Tanoh (about 1 year ago)helixturnhelix uses the method of Dodd and Egan and finds helix-turn-helix nucleic acid binding motifs in proteins.
The helix-turn-helix motif was originally identified as the DNA-binding domain of phage repressors. One alpha-helix lies in the wide groove of DNA; the other lies at an angle across DNA.
uludag (about 1 year ago)Identify nucleic acid-binding motifs in protein sequences
Login to add a description Details (from Soaplab server): from Soaplab server(10 months ago)
- ds_lsr_analysis :
- analysis :
- name : helixturnhelix
- output :
- version : 6.1.0
- type : Protein 2D Structure, Protein Motifs
- installation : Soaplab2 default installation
- description : Identify nucleic acid-binding motifs in protein sequences
- input :
- analysis_extension :
- analysis :
- ds_lsr_analysis :
- analysis :
- name : helixturnhelix
- output :
- version : 6.1.0
- type : Protein 2D Structure, Protein Motifs
- installation : Soaplab2 default installation
- description : Identify nucleic acid-binding motifs in protein sequences
- input :
- name : mean
- default : 238.71
- mandatory : false
- type : float
- name : sd
- default : 293.61
- mandatory : false
- type : float
- name : minsd
- default : 2.5
- mandatory : false
- type : float
- name : eightyseven
- default : false
- mandatory : false
- type : boolean
- analysis_extension :
- parameter :
- data :
- list :
- list_item :
- level : 0
- value : gcg
- level : 0
- value : gcg8
- level : 0
- value : embl
- level : 0
- value : swiss
- level : 0
- value : fasta
- level : 0
- value : ncbi
- level : 0
- value : genbank
- level : 0
- value : nbrf
- level : 0
- value : pir
- level : 0
- value : codata
- level : 0
- value : strider
- level : 0
- value : clustal
- level : 0
- value : phylip
- level : 0
- value : acedb
- level : 0
- value : msf
- level : 0
- value : jackknifer
- level : 0
- value : jackknifernon
- level : 0
- value : nexus
- level : 0
- value : nexusnon
- level : 0
- value : treecon
- level : 0
- value : mega
- level : 0
- value : meganon
- level : 0
- value : ig
- level : 0
- value : staden
- level : 0
- value : text
- level : 0
- value : raw
- type : full
- list_item :
- list :
- base :
- data :
- result :
- iotype : output
- base :
- range :
- format : %f
- max : 10000.
- min : 1.
- repeatable :
- base :
- ordering : 4
- name : mean
- option :
- name : scalemax
- value : 10000.
- type : style
- name : scalemin
- value : 1.
- type : style
- qualifier : mean
- default : 238.71
- mandatory : false
- type : float
- prompt : Mean value
- range :
- format : %f
- max : 10000.
- min : 1.
- repeatable :
- base :
- ordering : 5
- name : sd
- option :
- name : scalemax
- value : 10000.
- type : style
- name : scalemin
- value : 1.
- type : style
- qualifier : sd
- default : 293.61
- mandatory : false
- type : float
- prompt : Standard Deviation value
- range :
- format : %f
- max : 100.
- min : 0.
- repeatable :
- base :
- ordering : 6
- name : minsd
- option :
- name : scalemax
- value : 100.
- type : style
- name : scalemin
- value : 0.
- type : style
- qualifier : minsd
- default : 2.5
- mandatory : false
- type : float
- prompt : Minimum SD
- base :
- ordering : 7
- name : eightyseven
- qualifier : eightyseven
- default : false
- mandatory : false
- type : boolean
- prompt : Use the old (1987) weight data
- data :
- option :
- name : emboss
- value : true
- type : normal
- name : installation
- value : Soaplab2 default installation
- type : normal
- name : version
- value : 6.1.0
- type : normal
- app_info :
- category : protein_2d_structure
- help_url : http://emboss.sourceforge.net/apps/release/6.1/emboss/apps/helixturnhelix.html
- event :
- action :
- id : _E_1
- parameter :
- analysis :
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