Services - T-Coffee (SOAP) (SOAP) [Provided by: European Bioinformatics Institute (EMBL-EBI)]

Provider:
European Bioinformatics Institute (EBI)

Location:
United Kingdom

Submitter / Source:
Hamish McWilliam (about 1 year ago)

Base URL:
http://www.ebi.ac.uk/Tools/services/soap/tcoffee

WSDL Location:
http://www.ebi.ac.uk/Tools/services/soap/tcoffee?wsdl(download last cached WSDL file)

Documentation URL(s): Hamish McWilliam (about 1 year ago)http://www.ebi.ac.uk/Tools/webservices/services/msa/tcoffee_soap

Login to add a documentation URL Description(s): Hamish McWilliam (about 1 year ago)T-Coffee is a multiple sequence alignment program. The main characteristic of T-Coffee is that it will allow you to combine results obtained with several alignment methods. By default, T-Coffee will compare all you sequences two by two, producing a global alignment and a series of local alignments (using lalign). The program will then combine all these alignments into a multiple alignment.

Login to add a description License(s): Hamish McWilliam (11 months ago)EMBL-EBI Terms of Use: http://www.ebi.ac.uk/Information/termsofuse.html

Login to add cost info Usage Conditions: Hamish McWilliam (11 months ago)E-mail supplied for submission must be a valid e-mail address and no more than 25 concurrent jobs should be submitted at any one time, see http://www.ebi.ac.uk/Tools/webservices/about/webservices and the EMBL-EBI Terms of Use: http://www.ebi.ac.uk/Information/termsofuse.html

Login to add usage conditions info Contact Info: Hamish McWilliam (11 months ago)EMBL-EBI Support: http://www.ebi.ac.uk/support/index.php?query=WebServices

Login to add contact info Publications: for this service. This can be a URI to the publication and/or a DOI. Hamish McWilliam (1 day ago)Goujon M., McWilliam H., Li W., Valentin F., Squizzato S., Paern J. and Lopez R. (2010)
“A new bioinformatics analysis tools framework at EMBL-EBI.”
Nucleic Acids Res. 38:W695-9
PMID: 20439314 (http://www.ebi.ac.uk/citexplore/citationDetails.do?externalId=20439314&dataSource;=MED)
DOI: 10.1093/nar/gkq313 (http://dx.doi.org/10.1093/nar/gkq313)

Hamish McWilliam (1 day ago)Notredame C., Higgins D.G. and Heringa J. (2000)
“T-Coffee: A novel method for fast and accurate multiple sequence alignment.”
J. Mol. Biol. 302(1):205-17.
PMID: 10964570 (http://www.ebi.ac.uk/citexplore/citationDetails.do?externalId=10964570&dataSource;=MED)
DOI: 10.1006/jmbi.2000.4042 (http://dx.doi.org/10.1006/jmbi.2000.4042)