Services - MUSCLE (SOAP) (SOAP) [Provided by: European Bioinformatics Institute (EMBL-EBI)]

Provider:
European Bioinformatics Institute (EBI)

Location:
United Kingdom

Submitter / Source:
Hamish McWilliam (about 1 year ago)

Base URL:
http://www.ebi.ac.uk/Tools/services/soap/muscle

WSDL Location:
http://www.ebi.ac.uk/Tools/services/soap/muscle?wsdl(download last cached WSDL file)

Documentation URL(s): Hamish McWilliam (about 1 year ago)http://www.ebi.ac.uk/Tools/webservices/services/msa/muscle_soap

Login to add a documentation URL Description(s): Hamish McWilliam (about 1 year ago)MUSCLE (MUltiple Sequence Comparison by Log-Expectation) is claimed to achieve both better average accuracy and better speed than ClustalW or T-Coffee, depending on the chosen options. Multiple alignments of protein sequences are important in many applications, including phylogenetic tree estimation, secondary structure prediction and critical residue identification.

Login to add a description License(s): Hamish McWilliam (11 months ago)EMBL-EBI Terms of Use: http://www.ebi.ac.uk/Information/termsofuse.html

Login to add cost info Usage Conditions: Hamish McWilliam (11 months ago)E-mail supplied for submission must be a valid e-mail address and no more than 25 concurrent jobs should be submitted at any one time, see http://www.ebi.ac.uk/Tools/webservices/about/webservices and the EMBL-EBI Terms of Use: http://www.ebi.ac.uk/Information/termsofuse.html

Login to add usage conditions info Contact Info: Hamish McWilliam (11 months ago)EMBL-EBI Support: http://www.ebi.ac.uk/support/index.php?query=WebServices

Login to add contact info Publications: for this service. This can be a URI to the publication and/or a DOI. Hamish McWilliam (3 days ago)Goujon M., McWilliam H., Li W., Valentin F., Squizzato S., Paern J. and Lopez R. (2010)
“A new bioinformatics analysis tools framework at EMBL-EBI.”
Nucleic Acids Res. 38:W695-9
PMID: 20439314 (http://www.ebi.ac.uk/citexplore/citationDetails.do?externalId=20439314&dataSource;=MED)
DOI: 10.1093/nar/gkq313 (http://dx.doi.org/10.1093/nar/gkq313)

Hamish McWilliam (3 days ago)Edgar R.C. (2004)
“MUSCLE: multiple sequence alignment with high accuracy and high throughput.”
Nucleic Acids Res. 32(5):1792-7.
PMID: 15034147 (http://www.ebi.ac.uk/citexplore/citationDetails.do?externalId=15034147&dataSource;=MED)
DOI: 10.1093/nar/gkh340 (http://dx.doi.org/10.1093/nar/gkh340)