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About Soaplab
Soaplab services are command line applications, wrapped as SOAP services, and served from a Soaplab server. All Soaplab services have the same generic set of SOAP operations (depending on the Soaplab version) as they all share a standardised interface.
Certain tools, like the Taverna workflow workbench, provide automatic support for the Soaplab way of executing these services. In some cases you will need to use the Soaplab Server Base URL rather than the WSDL location in these tools.
More information on Soaplab clients is available here.
Further documentation on Soaplab services is available:
- Soaplab overview
- Soaplab client guide page
- EBI Soaplab server documentation
- Soaplab 2
- Sourceforge site for EMBOSS Soaplab services
Provider:
European Bioinformatics Institute (EMBL-EBI)
Location:
United Kingdom
Submitter/Source:
SoapLab Support (over 11 years ago)
Base URL:
http://www.ebi.ac.uk:80/soaplab/typed/services/phylogeny_discrete_characters.fpars
WSDL Location:
http://www.ebi.ac.uk/soaplab/typed/services/phylogeny_discrete_characters.fpars?wsdl(download last cached WSDL file)
Documentation URL(s): SoapLab Support (over 10 years ago) http://emboss.sourceforge.net/apps/release/6.0/emboss/apps/fpars.html Login to add a documentation URL Description(s): from provider’s description doc (over 10 years ago) Discrete character parsimony
SoapLab Support(over 10 years ago)
Discrete character parsimony
Login to add a description ELIXIR Description(s): No info yet Login to add an elixir description Details (from Soaplab server): from Soaplab server(over 10 years ago)
- ds_lsr_analysis :
- analysis :
- name : fpars
- installation : Soaplab2 default installation
- type : Phylogeny Discrete characters
- output :
- description : Discrete character parsimony
- version : 6.1.0
- analysis_extension :
- input :
- analysis :
- ds_lsr_analysis :
- analysis :
- name : fpars
- installation : Soaplab2 default installation
- type : Phylogeny Discrete characters
- output :
- description : Discrete character parsimony
- version : 6.1.0
- analysis_extension :
- option :
- name : emboss
- type : normal
- value : true
- name : installation
- type : normal
- value : Soaplab2 default installation
- name : version
- type : normal
- value : 6.1.0
- event :
- action :
- id : _E_1
- app_info :
- category : phylogeny_discrete_characters
- help_url : http://emboss.sourceforge.net/apps/release/6.1/emboss/apps/fpars.html
- parameter :
- data :
- ioformat : unspecified
- iotype : input
- repeatable :
- base :
- data :
- ioformat : unspecified
- iotype : input
- repeatable :
- base :
- data :
- result :
- iotype : output
- base :
- data :
- ioformat : unspecified
- iotype : input
- repeatable :
- base :
- standard :
- list :
- name : Method
- list_item :
- level : 0
- shown_as : Wagner
- value : w
- level : 0
- shown_as : Camin-Sokal
- value : c
- type : full
- repeatable :
- list :
- base :
- range :
- format : %d
- max : 1000000
- min : 1
- repeatable :
- base :
- name : maxtrees
- default : 100
- option :
- name : scalemax
- type : style
- value : 1000000
- name : scalemin
- type : style
- value : 1
- mandatory : false
- qualifier : maxtrees
- prompt : Number of trees to save
- type : long
- ordering : 8
- base :
- name : thorough
- default : false
- mandatory : false
- qualifier : thorough
- prompt : More thorough search
- type : boolean
- ordering : 9
- base :
- name : rearrange
- default : false
- mandatory : false
- qualifier : rearrange
- prompt : Rearrange on just one best tree
- type : boolean
- ordering : 10
- range :
- format : %d
- min : 0
- repeatable :
- base :
- name : njumble
- default : 0
- mandatory : false
- qualifier : njumble
- prompt : Number of times to randomise
- type : long
- ordering : 11
- range :
- format : %d
- max : 32767
- min : 1
- repeatable :
- base :
- name : seed
- default : 1
- option :
- name : scalemax
- type : style
- value : 32767
- name : scalemin
- type : style
- value : 1
- mandatory : false
- qualifier : seed
- prompt : Random number seed between 1 and 32767 (must be odd)
- type : long
- ordering : 12
- range :
- format : %d
- max :
- min : 0
- repeatable :
- base :
- name : outgrno
- default : 0
- option :
- name : calculated_hardmax
- type : normal
- value : ${infile.discretesize}
- mandatory : false
- qualifier : outgrno
- prompt : Species number to use as outgroup
- type : long
- ordering : 13
- base :
- name : thresh
- default : false
- mandatory : false
- qualifier : thresh
- prompt : Use threshold parsimony
- type : boolean
- ordering : 14
- range :
- format : %f
- min : 1
- repeatable :
- base :
- name : threshold
- default : 1
- option :
- name : scalemin
- type : style
- value : 1
- mandatory : false
- qualifier : threshold
- prompt : Threshold value
- type : float
- ordering : 15
- base :
- name : trout
- default : false
- mandatory : false
- qualifier : trout
- prompt : Write out trees to tree file
- type : boolean
- ordering : 19
- data :
- result :
- extension : treefile
- iotype : output
- base :
- base :
- name : printdata
- default : false
- mandatory : false
- qualifier : printdata
- prompt : Print data at start of run
- type : boolean
- ordering : 21
- base :
- name : progress
- default : false
- mandatory : false
- qualifier : progress
- prompt : Print indications of progress of run
- type : boolean
- ordering : 22
- base :
- name : treeprint
- default : false
- mandatory : false
- qualifier : treeprint
- prompt : Print out tree
- type : boolean
- ordering : 23
- base :
- name : stepbox
- default : false
- mandatory : false
- qualifier : stepbox
- prompt : Print steps at each site
- type : boolean
- ordering : 24
- base :
- name : ancseq
- default : false
- mandatory : false
- qualifier : ancseq
- prompt : Print states at all nodes of tree
- type : boolean
- ordering : 25
- base :
- name : dotdiff
- default : false
- mandatory : false
- qualifier : dotdiff
- prompt : Use dot differencing to display results
- type : boolean
- ordering : 26
- data :
- option :
- input :
- name : maxtrees
- default : 100
- mandatory : false
- type : long
- name : thorough
- default : false
- mandatory : false
- type : boolean
- name : rearrange
- default : false
- mandatory : false
- type : boolean
- name : njumble
- default : 0
- mandatory : false
- type : long
- name : seed
- default : 1
- mandatory : false
- type : long
- name : outgrno
- default : 0
- mandatory : false
- type : long
- name : thresh
- default : false
- mandatory : false
- type : boolean
- name : threshold
- default : 1
- mandatory : false
- type : float
- name : trout
- default : false
- mandatory : false
- type : boolean
- name : printdata
- default : false
- mandatory : false
- type : boolean
- name : progress
- default : false
- mandatory : false
- type : boolean
- name : treeprint
- default : false
- mandatory : false
- type : boolean
- name : stepbox
- default : false
- mandatory : false
- type : boolean
- name : ancseq
- default : false
- mandatory : false
- type : boolean
- name : dotdiff
- default : false
- mandatory : false
- type : boolean
- analysis :
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