EMBOSS fdollop SOAP Soaplab

This looks like a Soaplab service. Click here for more info and guidance on how to use this service )

About Soaplab

Soaplab services are command line applications, wrapped as SOAP services, and served from a Soaplab server. All Soaplab services have the same generic set of SOAP operations (depending on the Soaplab version) as they all share a standardised interface.

Certain tools, like the Taverna workflow workbench, provide automatic support for the Soaplab way of executing these services. In some cases you will need to use the Soaplab Server Base URL rather than the WSDL location in these tools.
More information on Soaplab clients is available here.

Further documentation on Soaplab services is available:

• Soaplab overview
• Soaplab client guide page
• EBI Soaplab server documentation
• Soaplab 2
• Sourceforge site for EMBOSS Soaplab services

Provider:
European Bioinformatics Institute (EMBL-EBI)

Location:
United Kingdom

Submitter/Source:
SoapLab Support (over 11 years ago)

Base URL:
http://www.ebi.ac.uk:80/soaplab/typed/services/phylogeny_discrete_characters.fdollop

WSDL Location:
http://www.ebi.ac.uk/soaplab/typed/services/phylogeny_discrete_characters.fdollop?wsdl(download last cached WSDL file)

Documentation URL(s): SoapLab Support (over 10 years ago) http://emboss.sourceforge.net/apps/release/6.0/emboss/apps/fdollop.html Login to add a documentation URL Description(s): from provider’s description doc (over 10 years ago) Dollo and polymorphism parsimony algorithm

SoapLab Support(over 10 years ago)

Dollo and polymorphism parsimony algorithm

Login to add a description ELIXIR Description(s): No info yet Login to add an elixir description Details (from Soaplab server): from Soaplab server(over 10 years ago)

• ds_lsr_analysis :
  • analysis :
    • name : fdollop
    • installation : Soaplab2 default installation
    • type : Phylogeny Discrete characters
    • output :
    • description : Dollo and polymorphism parsimony algorithm
    • version : 6.1.0
    • analysis_extension :
    • input :

Show all

• ds_lsr_analysis :
  • analysis :
    • name : fdollop
    • installation : Soaplab2 default installation
    • type : Phylogeny Discrete characters
    • output :
    • description : Dollo and polymorphism parsimony algorithm
    • version : 6.1.0
    • analysis_extension :
      • option :
        • name : emboss
        • type : normal
        • value : true
        • name : installation
        • type : normal
        • value : Soaplab2 default installation
        • name : version
        • type : normal
        • value : 6.1.0
      • event :
        • action :
        • id : _E_1
      • app_info :
        • category : phylogeny_discrete_characters
        • help_url : http://emboss.sourceforge.net/apps/release/6.1/emboss/apps/fdollop.html
      • parameter :
        • data :
          • ioformat : unspecified
          • iotype : input
          • repeatable :
        • base :
        • data :
          • ioformat : unspecified
          • iotype : input
          • repeatable :
        • base :
        • data :
          • result :
          • iotype : output
        • base :
        • data :
          • ioformat : unspecified
          • iotype : input
          • repeatable :
        • base :
        • data :
          • ioformat : unspecified
          • iotype : input
          • repeatable :
        • base :
        • standard :
          • list :
            • name : Method
            • list_item :
              • level : 0
              • shown_as : Dollo
              • value : d
              • level : 0
              • shown_as : Polymorphism
              • value : p
            • type : full
          • repeatable :
        • base :
        • range :
          • format : %d
          • min : 0
          • repeatable :
        • base :
          • name : njumble
          • default : 0
          • mandatory : false
          • qualifier : njumble
          • prompt : Number of times to randomise
          • type : long
          • ordering : 9
        • range :
          • format : %d
          • max : 32767
          • min : 1
          • repeatable :
        • base :
          • name : seed
          • default : 1
          • option :
            • name : scalemax
            • type : style
            • value : 32767
            • name : scalemin
            • type : style
            • value : 1
          • mandatory : false
          • qualifier : seed
          • prompt : Random number seed between 1 and 32767 (must be odd)
          • type : long
          • ordering : 10
        • range :
          • format : %f
          • min : 0
          • repeatable :
        • base :
          • name : threshold
          • option :
            • name : calculated_default
            • type : normal
            • value : ${infile.discretesize}
          • mandatory : false
          • qualifier : threshold
          • prompt : Threshold value
          • type : float
          • ordering : 11
        • base :
          • name : trout
          • default : false
          • mandatory : false
          • qualifier : trout
          • prompt : Write out trees to tree file
          • type : boolean
          • ordering : 15
        • data :
          • result :
          • extension : treefile
          • iotype : output
        • base :
        • base :
          • name : printdata
          • default : false
          • mandatory : false
          • qualifier : printdata
          • prompt : Print data at start of run
          • type : boolean
          • ordering : 17
        • base :
          • name : progress
          • default : false
          • mandatory : false
          • qualifier : progress
          • prompt : Print indications of progress of run
          • type : boolean
          • ordering : 18
        • base :
          • name : treeprint
          • default : false
          • mandatory : false
          • qualifier : treeprint
          • prompt : Print out tree
          • type : boolean
          • ordering : 19
        • base :
          • name : ancseq
          • default : false
          • mandatory : false
          • qualifier : ancseq
          • prompt : Print states at all nodes of tree
          • type : boolean
          • ordering : 20
        • base :
          • name : stepbox
          • default : false
          • mandatory : false
          • qualifier : stepbox
          • prompt : Print out steps in each character
          • type : boolean
          • ordering : 21
    • input :
      • name : njumble
      • default : 0
      • mandatory : false
      • type : long
      • name : seed
      • default : 1
      • mandatory : false
      • type : long
      • name : trout
      • default : false
      • mandatory : false
      • type : boolean
      • name : printdata
      • default : false
      • mandatory : false
      • type : boolean
      • name : progress
      • default : false
      • mandatory : false
      • type : boolean
      • name : treeprint
      • default : false
      • mandatory : false
      • type : boolean
      • name : ancseq
      • default : false
      • mandatory : false
      • type : boolean
      • name : stepbox
      • default : false
      • mandatory : false
      • type : boolean

License(s): No info yet Login to add license info Cost: No info yet Login to add cost info Usage conditions: No info yet Login to add usage conditions info Contact info: No info yet Login to add contact info How to cite this service: No info yet Login to add how to cite info Publications about this service: for this service (this can be in a common citation format like Bibtex, MLA or APA, a DOI, a URL, etc.) No info yet Login to add publications info Citations of this service: No info yet Login to add citations info Example workflows using this service: See all workflows on myExperiment that use this service Login to add workflows info