phosphoELMdb SOAP

Provider:
EMBL Nucleotide Sequence Database (Hiedelberg)

Location:
Heidelberg, Germany

Submitter / Source:
SeekDa (about 1 year ago)

Base URL:
http://luna.embl.de:8080/axis2/services/phosphoELMdb

WSDL Location:
http://phospho.elm.eu.org/webservice/phosphoELMdb.wsdl(download last cached WSDL file)

Documentation URL(s): None Login to add a documentation URL Description(s): from provider’s description doc(7 months ago)

This WSDL file describe the phospho.ELM database Web Service. The phospho.ELM database contains descriptions of sets of one or more orthologous proteins that are annotated to be phosphorylated.
The orthology grouping allows convenient cross-species comparison.

Reference:

Phospho.ELM: a database of phosphorylation sites–update 2008.
Diella, F., Gould, C.M., Chica, C., Via, A. and Gibson, T.J.
Nucleic Acids Res. 2008 Jan; 36(Database issue):D240-4. Epub 2007 Oct 25

URL:http://phospho.elm.eu.org

The EMBRACE Registry (about 1 year ago)The phospho.ELM database contains descriptions of sets of one or more orthologous eukaryotic proteins that are annotated to be phosphorylated.
The orthology grouping allows convenient cross-species comparison.

The web-service provides the following methods to gain access to the various information in the database:

 

    • getBindingDomainList

 

    • getKinaseList

 

    • getSubstrateByIdentifier

 

    • getSubstratesByNameSearch

 

    • getSubstratesByGeneNameSearch

 

    • getInstanceByIdentifier

 

    • getInstancesByBindingDomainText

 

    • getInstancesByKinaseTextSearch

 

    • getInstancesByProteinSequenceAccessionSearchWithAllThroughputData

 

    • getInstancesByProteinSequenceAccessionSearchWithLowThroughputDataOnly

 

    • getInstancesByProteinSequenceAccessionSearchForAllRelatedSpeciesWithAllThroughputData

 

    • getInstancesByProteinSequenceAccessionSearchForAllRelatedSpeciesWithLowThroughputDataOnly

 

    • getInstancesByPubMedId

 

    • getInstancesWithPdbEntryAssigned

 

Reference:

Phospho.ELM: a database of phosphorylation sites–update 2008.
Diella, F., Gould, C.M., Chica, C., Via, A. & Gibson, T.J.
Nucleic Acids Res. (Database Issue):D240-4 (2008)

URL: phospho.ELM

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