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About Soaplab
Soaplab services are command line applications, wrapped as SOAP services, and served from a Soaplab server. All Soaplab services have the same generic set of SOAP operations (depending on the Soaplab version) as they all share a standardised interface.
Certain tools, like the Taverna workflow workbench, provide automatic support for the Soaplab way of executing these services. In some cases you will need to use the Soaplab Server Base URL rather than the WSDL location in these tools.
More information on Soaplab clients is available here.
Further documentation on Soaplab services is available:
- Soaplab overview
- Soaplab client guide page
- EBI Soaplab server documentation
- Soaplab 2
- Sourceforge site for EMBOSS Soaplab services
Provider:
European Bioinformatics Institute (EMBL-EBI)
Location:
United Kingdom
Submitter/Source:
SoapLab Support (over 11 years ago)
Base URL:
http://www.ebi.ac.uk:80/soaplab/typed/services/nucleic_2d_structure.vrnadistance
WSDL Location:
http://www.ebi.ac.uk/soaplab/typed/services/nucleic_2d_structure.vrnadistance?wsdl(download last cached WSDL file)
Documentation URL(s): None Login to add a documentation URL Description(s): from provider’s description doc (over 10 years ago) RNA distances
Login to add a description ELIXIR Description(s): No info yet Login to add an elixir description Details (from Soaplab server): from Soaplab server(over 10 years ago)
- ds_lsr_analysis :
- analysis :
- name : vrnadistance
- installation : Soaplab2 default installation
- type : Nucleic RNA folding, Nucleic 2D structure
- output :
- description : RNA distances
- version : 6.1.0
- analysis_extension :
- input :
- analysis :
- ds_lsr_analysis :
- analysis :
- name : vrnadistance
- installation : Soaplab2 default installation
- type : Nucleic RNA folding, Nucleic 2D structure
- output :
- description : RNA distances
- version : 6.1.0
- analysis_extension :
- option :
- name : emboss
- type : normal
- value : true
- name : installation
- type : normal
- value : Soaplab2 default installation
- name : version
- type : normal
- value : 6.1.0
- event :
- action :
- id : _E_1
- app_info :
- category : nucleic_rna_folding
- help_url : http://emboss.sourceforge.net/apps/release/6.1/emboss/apps/vrnadistance.html
- parameter :
- data :
- ioformat : unspecified
- iotype : input
- repeatable :
- base :
- data :
- result :
- iotype : output
- base :
- choice_list :
- separator : ,
- grouptype : zero_or_more
- base :
- name : distance_f
- default : true
- mandatory : false
- qualifier : f
- type : boolean
- prompt : Full (tree)
- ordering : 5
- name : distance_h
- default : false
- mandatory : false
- qualifier : h
- type : boolean
- prompt : HIT (tree)
- ordering : 6
- name : distance_w
- default : false
- mandatory : false
- qualifier : w
- type : boolean
- prompt : Weighted coarse (tree)
- ordering : 7
- name : distance_c
- default : false
- mandatory : false
- qualifier : c
- type : boolean
- prompt : Coarse (tree)
- ordering : 8
- name : distance_F
- default : false
- mandatory : false
- qualifier : F
- type : boolean
- prompt : Full (string)
- ordering : 9
- name : distance_H
- default : false
- mandatory : false
- qualifier : H
- type : boolean
- prompt : HIT (string)
- ordering : 10
- name : distance_W
- default : false
- mandatory : false
- qualifier : W
- type : boolean
- prompt : Weighted coarse (string)
- ordering : 11
- name : distance_C
- default : false
- mandatory : false
- qualifier : C
- type : boolean
- prompt : Coarse (string)
- ordering : 12
- name : distance_P
- default : false
- mandatory : false
- qualifier : P
- type : boolean
- prompt : Base pair distance
- ordering : 13
- base :
- standard :
- list :
- name : Comparison type
- list_item :
- level : 0
- shown_as : Pairwise
- value : p
- level : 0
- shown_as : Distance matrix between all structures
- value : m
- level : 0
- shown_as : Compare all structures to the first one
- value : f
- level : 0
- shown_as : Compare continuously
- value : c
- type : full
- repeatable :
- list :
- base :
- base :
- name : schapiro
- default : false
- mandatory : false
- qualifier : schapiro
- prompt : Use cost matrix for comparing coarse structures
- type : boolean
- ordering : 15
- base :
- name : doalignment
- default : false
- mandatory : false
- qualifier : doalignment
- prompt : Alignment showing matching substructures
- type : boolean
- ordering : 16
- data :
- option :
- input :
- name : distance_f
- default : true
- mandatory : false
- type : boolean
- name : distance_h
- default : false
- mandatory : false
- type : boolean
- name : distance_w
- default : false
- mandatory : false
- type : boolean
- name : distance_c
- default : false
- mandatory : false
- type : boolean
- name : distance_F
- default : false
- mandatory : false
- type : boolean
- name : distance_H
- default : false
- mandatory : false
- type : boolean
- name : distance_W
- default : false
- mandatory : false
- type : boolean
- name : distance_C
- default : false
- mandatory : false
- type : boolean
- name : distance_P
- default : false
- mandatory : false
- type : boolean
- name : schapiro
- default : false
- mandatory : false
- type : boolean
- name : doalignment
- default : false
- mandatory : false
- type : boolean
- analysis :
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