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Provider:
European Bioinformatics Institute (EMBL-EBI)
Location:
United Kingdom
Submitter/Source:
SoapLab Support (almost 12 years ago)
Base URL:
http://www.ebi.ac.uk:80/soaplab/typed/services/display.sixpack
WSDL Location:
http://www.ebi.ac.uk/soaplab/typed/services/display.sixpack?wsdl(download last cached WSDL file)
Documentation URL(s): SoapLab Support (over 10 years ago) http://emboss.sourceforge.net/apps/release/6.0/emboss/apps/sixpack.html Login to add a documentation URL Description(s): from provider’s description doc (over 10 years ago) Display a DNA sequence with 6-frame translation and ORFs
SoapLab Support(over 10 years ago)
Display a DNA sequence with 6-frame translation and ORFs
Login to add a description ELIXIR Description(s): No info yet Login to add an elixir description Details (from Soaplab server): from Soaplab server(over 10 years ago)
- ds_lsr_analysis :
- analysis :
- name : sixpack
- installation : Soaplab2 default installation
- type : Display, Nucleic Gene finding, Nucleic Translation
- output :
- description : Display a DNA sequence with 6-frame translation and ORFs
- version : 6.1.0
- analysis_extension :
- input :
- analysis :
- ds_lsr_analysis :
- analysis :
- name : sixpack
- installation : Soaplab2 default installation
- type : Display, Nucleic Gene finding, Nucleic Translation
- output :
- description : Display a DNA sequence with 6-frame translation and ORFs
- version : 6.1.0
- analysis_extension :
- option :
- name : emboss
- type : normal
- value : true
- name : installation
- type : normal
- value : Soaplab2 default installation
- name : version
- type : normal
- value : 6.1.0
- event :
- action :
- id : _E_1
- app_info :
- category : display
- help_url : http://emboss.sourceforge.net/apps/release/6.1/emboss/apps/sixpack.html
- parameter :
- data :
- list :
- list_item :
- level : 0
- value : gcg
- level : 0
- value : gcg8
- level : 0
- value : embl
- level : 0
- value : swiss
- level : 0
- value : fasta
- level : 0
- value : ncbi
- level : 0
- value : genbank
- level : 0
- value : nbrf
- level : 0
- value : pir
- level : 0
- value : codata
- level : 0
- value : strider
- level : 0
- value : clustal
- level : 0
- value : phylip
- level : 0
- value : acedb
- level : 0
- value : msf
- level : 0
- value : jackknifer
- level : 0
- value : jackknifernon
- level : 0
- value : nexus
- level : 0
- value : nexusnon
- level : 0
- value : treecon
- level : 0
- value : mega
- level : 0
- value : meganon
- level : 0
- value : ig
- level : 0
- value : staden
- level : 0
- value : text
- level : 0
- value : raw
- type : full
- list_item :
- list :
- base :
- data :
- result :
- iotype : output
- base :
- standard :
- list :
- name : Genetic codes
- list_item :
- level : 0
- shown_as : Standard
- value : 0
- level : 0
- shown_as : Standard (with alternative initiation codons)
- value : 1
- level : 0
- shown_as : Vertebrate Mitochondrial
- value : 2
- level : 0
- shown_as : Yeast Mitochondrial
- value : 3
- level : 0
- shown_as : Mold, Protozoan, Coelenterate Mitochondrial and Mycoplasma/Spiroplasma
- value : 4
- level : 0
- shown_as : Invertebrate Mitochondrial
- value : 5
- level : 0
- shown_as : Ciliate Macronuclear and Dasycladacean
- value : 6
- level : 0
- shown_as : Echinoderm Mitochondrial
- value : 9
- level : 0
- shown_as : Euplotid Nuclear
- value : 10
- level : 0
- shown_as : Bacterial
- value : 11
- level : 0
- shown_as : Alternative Yeast Nuclear
- value : 12
- level : 0
- shown_as : Ascidian Mitochondrial
- value : 13
- level : 0
- shown_as : Flatworm Mitochondrial
- value : 14
- level : 0
- shown_as : Blepharisma Macronuclear
- value : 15
- level : 0
- shown_as : Chlorophycean Mitochondrial
- value : 16
- level : 0
- shown_as : Trematode Mitochondrial
- value : 21
- level : 0
- shown_as : Scenedesmus obliquus
- value : 22
- level : 0
- shown_as : Thraustochytrium Mitochondrial
- value : 23
- type : full
- repeatable :
- list :
- base :
- base :
- name : firstorf
- help : Count the beginning of a sequence as a possible ORF, even if it’s inferior to the minimal ORF size.
- default : false
- mandatory : false
- qualifier : firstorf
- prompt : ORF at the beginning of the sequence
- type : boolean
- ordering : 5
- base :
- name : lastorf
- help : Count the end of a sequence as a possible ORF, even if it’s not finishing with a STOP, or inferior to the minimal ORF size.
- default : false
- mandatory : false
- qualifier : lastorf
- prompt : ORF at the end of the sequence
- type : boolean
- ordering : 6
- base :
- name : mstart
- help : Displays only ORFs starting with an M.
- default : false
- mandatory : false
- qualifier : mstart
- prompt : ORF start with an M
- type : boolean
- ordering : 7
- data :
- result :
- iotype : output
- base :
- base :
- name : reverse
- help : Display also the translation of the DNA sequence in the 3 reverse frames
- default : false
- mandatory : false
- qualifier : reverse
- prompt : Display translation of reverse sense
- type : boolean
- ordering : 12
- range :
- format : %d
- min : 1
- repeatable :
- base :
- name : orfminsize
- help : Minimum size of Open Reading Frames (ORFs) to display in the translations.
- default : 1
- option :
- name : scalemin
- type : style
- value : 1
- mandatory : false
- qualifier : orfminsize
- prompt : Minimum size of ORFs
- type : long
- ordering : 13
- standard :
- repeatable :
- base :
- standard :
- repeatable :
- base :
- base :
- name : number
- help : Number the sequence at the beginning and the end of each line.
- default : false
- mandatory : false
- qualifier : number
- prompt : Number the sequences
- type : boolean
- ordering : 16
- range :
- format : %d
- min : 1
- repeatable :
- base :
- name : width
- help : Number of nucleotides displayed on each line
- default : 60
- option :
- name : scalemin
- type : style
- value : 1
- mandatory : false
- qualifier : width
- prompt : Width of sequence to display
- type : long
- ordering : 17
- range :
- format : %d
- min : 0
- repeatable :
- base :
- name : length
- default : 0
- mandatory : false
- qualifier : length
- prompt : Line length of page (0 for indefinite)
- type : long
- ordering : 18
- range :
- format : %d
- min : 0
- repeatable :
- base :
- name : margin
- default : 10
- mandatory : false
- qualifier : margin
- prompt : Margin around sequence for numbering.
- type : long
- ordering : 19
- base :
- name : name
- help : Set this to be false if you do not wish to display the ID name of the sequence.
- default : false
- mandatory : false
- qualifier : name
- prompt : Display sequence ID
- type : boolean
- ordering : 20
- base :
- name : description
- help : Set this to be false if you do not wish to display the description of the sequence.
- default : false
- mandatory : false
- qualifier : description
- prompt : Display description
- type : boolean
- ordering : 21
- range :
- format : %d
- repeatable :
- base :
- name : offset
- help : Number from which you want the DNA sequence to be numbered.
- default : 1
- mandatory : false
- qualifier : offset
- prompt : Offset to start numbering the sequence from
- type : long
- ordering : 22
- base :
- name : html
- default : false
- mandatory : false
- qualifier : html
- prompt : Use HTML formatting
- type : boolean
- ordering : 23
- standard :
- list :
- list_item :
- level : 0
- value : gcg
- level : 0
- value : gcg8
- level : 0
- value : embl
- level : 0
- value : swiss
- level : 0
- value : fasta
- level : 0
- value : ncbi
- level : 0
- value : genbank
- level : 0
- value : nbrf
- level : 0
- value : pir
- level : 0
- value : codata
- level : 0
- value : strider
- level : 0
- value : clustal
- level : 0
- value : phylip
- level : 0
- value : acedb
- level : 0
- value : msf
- level : 0
- value : jackknifer
- level : 0
- value : jackknifernon
- level : 0
- value : nexus
- level : 0
- value : nexusnon
- level : 0
- value : treecon
- level : 0
- value : mega
- level : 0
- value : meganon
- level : 0
- value : ig
- level : 0
- value : staden
- level : 0
- value : text
- level : 0
- value : raw
- type : full
- list_item :
- repeatable :
- list :
- base :
- data :
- option :
- input :
- name : firstorf
- default : false
- mandatory : false
- type : boolean
- name : lastorf
- default : false
- mandatory : false
- type : boolean
- name : mstart
- default : false
- mandatory : false
- type : boolean
- name : reverse
- default : false
- mandatory : false
- type : boolean
- name : orfminsize
- default : 1
- mandatory : false
- type : long
- name : number
- default : false
- mandatory : false
- type : boolean
- name : width
- default : 60
- mandatory : false
- type : long
- name : length
- default : 0
- mandatory : false
- type : long
- name : margin
- default : 10
- mandatory : false
- type : long
- name : name
- default : false
- mandatory : false
- type : boolean
- name : description
- default : false
- mandatory : false
- type : boolean
- name : offset
- default : 1
- mandatory : false
- type : long
- name : html
- default : false
- mandatory : false
- type : boolean
- analysis :
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