Instituto Nacional de Bioinformatica (INB)

 

runEmbossPepcoilFromSequence SOAP

WARNING
Some or all of the tests for this service did not succeed

  • Could not access endpoint .

Last checked: today about 2 hours ago

Coiled coil region prediction.

Provider: Instituto Nacional de Bioinformatica (INB) WSDL Location: http://inb.bsc.es/wsdl/runEmbossPepcoilFromSequence.wsdl

runEmbossSigcleaveFromSequence SOAP

WARNING
Some or all of the tests for this service did not succeed

  • Could not access endpoint .

Last checked: today about 2 hours ago

Predicts the site of cleavage between a signal sequence and the mature exported protein.

Provider: Instituto Nacional de Bioinformatica (INB) WSDL Location: http://inb.bsc.es/wsdl/runEmbossSigcleaveFromSequence.wsdl

runNCBIBlastx SOAP

WARNING
Some or all of the tests for this service did not succeed

  • Could not access endpoint .

Last checked: today about 2 hours ago

Compares a nucleotide query sequence translated in all reading frames against a protein sequence database and calculates the statistical significance of matches using the Basic Local Alignment Tool (BLAST).

Provider: Instituto Nacional de Bioinformatica (INB) WSDL Location: http://inb.bsc.es/wsdl/runNCBIBlastx.wsdl

runNCBIBlastp SOAP

WARNING
Some or all of the tests for this service did not succeed

  • Could not access endpoint .

Last checked: today about 2 hours ago

Compares a protein sequence against a protein database and calculates the statistical significance of matches using the Basic Local Alignment Tool (BLAST).

Provider: Instituto Nacional de Bioinformatica (INB) WSDL Location: http://inb.bsc.es/wsdl/runNCBIBlastp.wsdl

runNCBIBlastn SOAP

WARNING
Some or all of the tests for this service did not succeed

  • Could not access endpoint .

Last checked: today about 2 hours ago

Compares a nucleotide sequence to a nucleotide sequence database and calculates the statistical significance of matches using the Basic Local Alignment Search Tool (BLAST).

Provider: Instituto Nacional de Bioinformatica (INB) WSDL Location: http://inb.bsc.es/wsdl/runNCBIBlastn.wsdl

getEntryFromPDB SOAP

 

WARNING
Some or all of the tests for this service did not succeed

  • Could not access endpoint .

Last checked: today about 2 hours ago

Retrieves an entry from PDB database.

Provider: Instituto Nacional de Bioinformatica (INB) WSDL Location: http://inb.bsc.es/wsdl/getEntryFromPDB.wsdl

getAminoAcidSequence SOAP

 

WARNING
Some or all of the tests for this service did not succeed

  • Could not access endpoint .

Last checked: today about 2 hours ago

Retrieves an aminoacid sequence from an aminoacid database.

Provider: Instituto Nacional de Bioinformatica (INB) WSDL Location: http://inb.bsc.es/wsdl/getAminoAcidSequence.wsdl

overlappingFromBL2G SOAP

PASSED
All tests were successful for this service
Last checked: today about 2 hours ago

Overlapping from blast2gene.

Provider: Instituto Nacional de Bioinformatica (INB) WSDL Location: http://www.inab.org/dproxy/inb.bsc.es/overlappingFromBL2G?wsdl

getCATHHierarchyCodesFromPDBID SOAP

PASSED
All tests were successful for this service
Last checked: today about 2 hours ago

Retrieves all domain hierarchy codes from a pdb id.

Provider: Instituto Nacional de Bioinformatica (INB) WSDL Location: http://www.inab.org/dproxy/inb.bsc.es/getCATHHierarchyCodesFromPDBID?wsdl

getFeatureAASequenceFromUniprot SOAP

PASSED
All tests were successful for this service
Last checked: today about 2 hours ago

Returns a sequence from uniprot annotated with all its features.

Provider: Instituto Nacional de Bioinformatica (INB) WSDL Location: http://www.inab.org/dproxy/inb.bsc.es/getFeatureAASequenceFromUniprot?wsdl

runNCBIBlastx_2Seqs SOAP

PASSED
All tests were successful for this service
Last checked: today about 2 hours ago

Compares a nucleotide query sequence translated in all reading frames against a protein sequence (used as a database) using the Basic Local Alignment Tool (BLAST).

Provider: Instituto Nacional de Bioinformatica (INB) WSDL Location: http://www.inab.org/dproxy/inb.bsc.es/runNCBIBlastx_2Seqs?wsdl

runEmbossIepFromSequence SOAP

PASSED
All tests were successful for this service
Last checked: today about 2 hours ago

It calculates the isoelectric point of a protein from its amino acid composition assuming that no electrostatic interactions change the propensity for ionization.

Provider: Instituto Nacional de Bioinformatica (INB) WSDL Location: http://www.inab.org/dproxy/inb.bsc.es/runEmbossIepFromSequence?wsdl

parseRulesFromMotif SOAP

PASSED
All tests were successful for this service
Last checked: today about 2 hours ago

Parse rules from a motif.

Provider: Instituto Nacional de Bioinformatica (INB) WSDL Location: http://www.inab.org/dproxy/inb.bsc.es/parseRulesFromMotif?wsdl

runHMMPfam SOAP

PASSED
All tests were successful for this service
Last checked: today about 2 hours ago

Searches a HMM profile database (Pfam) with a query sequence. Use this if you are trying to annotate an unknown sequence.

Provider: Instituto Nacional de Bioinformatica (INB) WSDL Location: http://www.inab.org/dproxy/inb.bsc.es/runHMMPfam?wsdl

runClustalwFull SOAP

PASSED
All tests were successful for this service
Last checked: today about 2 hours ago

ClustalW multiple sequence alignments (full method).

Provider: Instituto Nacional de Bioinformatica (INB) WSDL Location: http://www.inab.org/dproxy/inb.bsc.es/runClustalwFull?wsdl

runEmbossConsFromAlignment SOAP

PASSED
All tests were successful for this service
Last checked: today about 2 hours ago

Creates a consensus from multiple alignments.

Provider: Instituto Nacional de Bioinformatica (INB) WSDL Location: http://www.inab.org/dproxy/inb.bsc.es/runEmbossConsFromAlignment?wsdl

getUniprotIDsFromAccession SOAP

PASSED
All tests were successful for this service
Last checked: today about 2 hours ago

Returns the names or ids of a uniprot entry identified by the input accession.

Provider: Instituto Nacional de Bioinformatica (INB) WSDL Location: http://www.inab.org/dproxy/inb.bsc.es/getUniprotIDsFromAccession?wsdl

runPhylipProtpars SOAP

PASSED
All tests were successful for this service
Last checked: today about 2 hours ago

Estimates phylogenies from protein sequences by unrooted parsimony.

Provider: Instituto Nacional de Bioinformatica (INB) WSDL Location: http://www.inab.org/dproxy/inb.bsc.es/runPhylipProtpars?wsdl

parseSwissIntoPDBids SOAP

PASSED
All tests were successful for this service
Last checked: today about 2 hours ago

Retrieves the PDB ids from the DR lines from a parameter structured as SWISSPROT file.

Provider: Instituto Nacional de Bioinformatica (INB) WSDL Location: http://www.inab.org/dproxy/inb.bsc.es/parseSwissIntoPDBids?wsdl

runEmbossNeedleFromSequences SOAP

PASSED
All tests were successful for this service
Last checked: today about 2 hours ago

Makes a pairwise global alingment using the Needleman-Wunsch global alignment algorithm.

Provider: Instituto Nacional de Bioinformatica (INB) WSDL Location: http://www.inab.org/dproxy/inb.bsc.es/runEmbossNeedleFromSequences?wsdl

runPhylipFitch SOAP

PASSED
All tests were successful for this service
Last checked: today about 2 hours ago

Estimates phylogenies from distance matrix data using the Fitch-Margoliash method and some related least squares methods.

Provider: Instituto Nacional de Bioinformatica (INB) WSDL Location: http://www.inab.org/dproxy/inb.bsc.es/runPhylipFitch?wsdl